Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq67 251 7e-62 >seq67 Length=308067 Score = 251 bits (278), Expect = 7e-62 Identities = 610/911 (67%), Gaps = 32/911 (4%) Strand=Plus/Plus Query 94467 GATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAA 94526 |||| |||| | ||||| || ||||| ||||||||||| ||| ||||||| || ||| Sbjct 208205 GATCCTGGAGGCCCAGGTCGAAACGGGGACGCCCTACATGATGTACAAGGACGCTTGCAA 208264 Query 94527 CGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGAT 94586 | |||||| |||||| || |||| ||| |||||||||| || |||||||| || || Sbjct 208265 CAGCAAGTCGAACCAGAAGAACCTGGGGACGATCAAGAGCAGTAACCTGTGCACGGAAAT 208324 Query 94587 TGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTC 94646 |||||||| || || ||||||||| || || || ||||||| || ||| ||||| Sbjct 208325 CGTCGAGTACACGTCGGCGGACGAGACGGCCGTCTGCAACCTGGCGTCGATCGCACTGTC 208384 Query 94647 CACTTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAA 94706 || ||||| || ||| |||| | |||| | | ||| | || |||| Sbjct 208385 CAAGTTCGTCACTGACGCC---ACGTT--CGACTTCCATA-AGCTGTACGAC---GTGAC 208435 Query 94707 CTTCGCGGGAAGGATGGTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGT 94766 | | | | || | || |||||||||| ||| |||||| |||| ||||| || Sbjct 208436 GTACACTGTAACGCTG------AACCTGAACAAGGTGATCGACGGCAACTATTACCCTGT 208489 Query 94767 -CCCGGAG-GCGGAGAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGT 94824 |||| || ||| || || ||| || || ||||| |||| |||||||||||||| Sbjct 208490 GCCCGAAGCGCGCCGA--TCGAACATGCGACACAGGCCCGTCGGAATCGGCGTCCAGGGC 208547 Query 94825 TTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTG 94884 | |||||||| | | |||||| || | |||||| || ||| | || Sbjct 208548 CTTGCGGACGCCTTCATCCAGATGCGGTACCCGTTCGACTCGCCGGAGGCGCGCGCACTG 208607 Query 94885 AATTTGAACATATTCGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACT----T 94940 || |||| ||||| | || || | | |||| || || | | |||| | Sbjct 208608 AACCGCGACATCTTCGAGACGATCTACTTTGCGGCC-TG---CACTGCCTCCAAGGATCT 208663 Query 94941 GGCCAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCAT 95000 |||| ||||||| || |||| ||||||| || || | |||||||| Sbjct 208664 GGCCGTTAAGGACGGC---CCCTACGAGTCGTTCCCTGGCAGCCCGGCGTCCCAGGGCAT 208720 Query 95001 TTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACG 95060 | | ||||||||| | ||| ||| ||||| ||| | | |||||||| || || Sbjct 208721 TCTCCAGTTCGACATGTGGAATGTAAAGCCGTCGTCGCGATGGGACTGGGACGCGCTGAA 208780 Query 95061 CGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGC 95120 || ||| | | || || || || || |||| | || || |||||||| || Sbjct 208781 GGCCGATATCGCCCGGCATGGCATGCGGAATTCGTTGCTGCTCGCGCCGATGCCCACAGC 208840 Query 95121 CTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTA 95180 || || |||||||| || |||||||||| ||||| || | ||| |||| | || Sbjct 208841 GTCAACCAGCCAGATCCTGGGGAACAACGAGTGCTTCGAGCCGTACACGAGCAACATCTA 208900 Query 95181 CAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCT 95240 | || || ||||| || || || ||| ||||||||||||||||||| || |||||| Sbjct 208901 CGCGAGACGTGTGCTGGCTGGTGAGTTCACCGTCATCAACAAGCACCTGCTGGTGGACCT 208960 Query 95241 GACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGC-CAACGGCT 95299 || | ||| |||||| ||| | | |||| ||| | || | |||||| | Sbjct 208961 GATCAACCGGGGCCTGTGGGACGACGACTTGCGCCACCAGCTGAT-GGCACACAACGGGT 209019 Query 95300 CCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGG 95359 | ||||||||||| | ||| ||| |||| |||||| || ||||||||||| |||| Sbjct 209020 CGGTCCAGAACATTGACCGAATCCCGCAGGATCTCAAGGACCTGTACAAGACCGTTTGGG 209079 Query 95360 AGATCCCGCAG 95370 ||||| |||| Sbjct 209080 AGATCAAGCAG 209090 Score = 212 bits (234), Expect = 6e-50 Identities = 342/492 (70%), Gaps = 0/492 (0%) Strand=Plus/Plus Query 93721 GATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTT 93780 || || || | |||||| || ||||| ||||||||| || ||| | || |||| | | Sbjct 207404 GACTATTTCGGCTTCAAGACCCTGGAACGGTCGTACCTGCTGAAGGTCGACGGCAAGATC 207463 Query 93781 TCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATG 93840 ||||||| || || || ||||||||||||||||| |||| || ||| || || Sbjct 207464 GCCGAGCGCCCACAGCACATGCTGATGCGCGTCGCCGTCGGCATCCACAAGTCGGATATC 207523 Query 93841 CCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCG 93900 || | | | | | || |||| || ||| ||| || || ||||| Sbjct 207524 GCGGCGGCCATCCAAACGTACAACCTCATGTCCGAGAAGTGGTTCACGCACGCGTCCCCG 207583 Query 93901 ACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAAC 93960 ||| |||||||||| || || || || || || ||||| || || |||||| || || | Sbjct 207584 ACCATGTTCAACGCCGGCACGCCCGTCCCGCAAATGTCGTCCTGCTTCCTGGTGGCGCTC 207643 Query 93961 AAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAA 94020 ||| |||||||||| || || | ||||| || || || || | |||||| || Sbjct 207644 AAGAACGACTCCATCGAGGGCATCTACGACACGCTGCGCGAATGCGCCATCATCTCCAAG 207703 Query 94021 TACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGC 94080 | || || || || || || || ||| |||| || |||| || |||||||| || Sbjct 207704 TCGGCCGGCGGCATTGGCGTCCACGTGCACAACGTGCGCGCCACCGGCTCCTACATTCGT 207763 Query 94081 GGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCG 94140 ||||| || ||||| || |||||| ||||||| ||||| || || ||| | || | || Sbjct 207764 GGTACGAACGGCACGTCGAACGGCATCGTCCCCATGCTTCGCGTGTTCTCCGACACTGCC 207823 Query 94141 CGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCC 94200 |||||||| |||||||| || |||| | ||||| | ||||| || || || || || Sbjct 207824 CGCTACGTCGACCAGGGCGGCGGGAAACGCAAGGGCGCGTTCGCCGTGTACCTGGAACCG 207883 Query 94201 TGGCACGCGGAC 94212 |||||||||||| Sbjct 207884 TGGCACGCGGAC 207895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494719075245320