Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq334 131 2e-25 seq67 107 2e-18 seq634 100 3e-16 seq179 95.1 1e-14 seq45 93.3 4e-14 >seq334 Length=1041161 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | |||| ||||| || | || |||||||| || || ||||| ||| | Sbjct 527346 TCCGCCACGAAGACGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGC 527287 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | |||||| ||| || ||||| ||||||||| |||||| ||||| || ||||| || Sbjct 527286 AAGCGTGCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGGTCGGGCGG 527227 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||||||| ||||| |||| || || | ||||| Sbjct 527226 GATGCCCTCCTTGTCCTGGATTTTCGCCTTGACAGTCTCGATCGTATCACCAGAGTCGAC 527167 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || | || | ||| ||||| ||||| || || || || |||||||||| Sbjct 527166 GTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGG 527117 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || | ||||| || | || | ||| || ||||| || || ||||| ||| | Sbjct 527114 CCGCCACGAAGTCGCAGGACGAGGTGAAGCGTCGATTCTTTCTGGATGTTGTAGTCGGCA 527055 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || |||||||| || || |||| | ||||||||| || || || Sbjct 527054 AGCGTGCGCCCATCCTCGAGCTGTTTGCCGGCAAAGATGAGTCGCTGCTGGTCCGGCGGG 526995 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||||||| ||||| |||| |||||| | ||||| Sbjct 526994 ATACCCTCCTTGTCCTGGATTTTCGCCTTGACAGTCTCGATGGTGTCACCAGAGTCGACG 526935 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| ||||| ||||| || || || || |||||||| Sbjct 526934 TCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 526888 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | |||| || | || | ||| ||||| || || |||||||| ||| | Sbjct 526653 TCCACCACGGAGACGCAGAACAAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGGC 526594 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||| || || || ||||| || || ||| |||||| |||||||| ||||| || Sbjct 526593 TAGCGTCCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGG 526534 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||| | |||| ||||| || ||||| Sbjct 526533 AATACCCTCCTTGTCCTGGATCTTGGCCTTCACGGTCTCGATCGTGTCACCGCTGTCGAC 526474 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 |||| || | || ||||| ||||| || || || || |||||||||| Sbjct 526473 GTCGAGCGTAATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGG 526424 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || ||||| ||| ||| |||||| || || ||||| || || Sbjct 945213 CGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGCTTACC 945154 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| |||||| ||||| || || || || ||||||||||||||| ||| || ||| Sbjct 945153 AGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTT 945094 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || |||| ||||||| | | || |||| || | ||| |||||||| || || Sbjct 945093 GACGGCCTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTGCCGGTAAGCGT 945034 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 945033 CTTGACGAATATTTGCAT 945016 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | |||| || | || | ||| || || || ||||| ||||| ||| | Sbjct 526884 TCCACCACGAAGACGCAGAACGAGGTGAAGCGTCGATTCCTTCTGAATGTTGTAGTCGGC 526825 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| ||| || ||||| || ||||| |||||| |||||||| || || || Sbjct 526824 GAGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGCGG 526765 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGT--CCGTACTCTCG 127063 || |||||||||||| ||| ||| ||||| |||| |||| ||| | ||| Sbjct 526764 GATACCCTCCTTGTCCTGGATCTTCGCCTTGACCGTCTCGATCGTGTCGCCGGA--GTCG 526707 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | || || ||||||| || || || || |||||||| Sbjct 526706 ACGTCGAGCGTGATGGTCTTCCCGGTCAAGGTCTTCACGAAGATCTGCAT 526657 >seq67 Length=308067 Score = 107 bits (118), Expect = 2e-18 Identities = 238/352 (68%), Gaps = 4/352 (1%) Strand=Plus/Minus Query 145858 GATTGGCTCTGATCAATGAAAGGAGCC-CGGTCGGCGGCCATGTCTATCATGCACTTTGA 145916 ||||| ||| |||||||| || ||| || |||||||||||||| |||| |||| Sbjct 209146 GATTGCGACTGGTCAATGAA-GGCGCCGCGATCGGCGGCCATGTCAATCAGCGACTTCTG 209088 Query 145917 TTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTT 145976 || || ||||| |||| || | || ||||||| | ||| || ||| ||||||||| Sbjct 209087 CTTGATCTCCCAAACGGTCTTGTACAGGTCCTTGAGATCCTGCGGGATTCGGTCAATGTT 209028 Query 145977 CTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAATTCTGGAGT-GTAAATGTTCA 146035 ||| || ||||| || | |||| | | || |||||| || | || | | | | Sbjct 209027 CTGGACCGACCCGTTGTGTGCCATCAGCTGGTGGCGCAAGTC-GTCGTCCCACAGGCCCC 208969 Query 146036 AGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGC 146095 || | ||| || | || | || ||||| || ||||| || || || || | Sbjct 208968 GGTTGATCAGGTCCACCAGCAGGTGCTTGTTGATGACGGTGAACTCACCAGCCAGCACAC 208909 Query 146096 GCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCG 146155 | ||| || | |||||| ||| |||||||||| |||||||||| || || ||||| Sbjct 208908 GTCTCGCGTAGATGTTGCTCGTGTACGGCTCGAAGCACTCGTTGTTCCCCAGGATCTGGC 208849 Query 146156 CCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207 || | || || ||||| ||| | |||||| || || | || ||| || Sbjct 208848 TGGTTGACGCTGTGGGCATCGGCGCGAGCAGCAACGAATTCCGCATGCCATG 208797 >seq634 Length=872753 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || ||||| ||| | | |||||| ||| || ||||| || || Sbjct 526684 CGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCATCCTCGAGCTGCTTGCC 526743 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 |||| |||||| ||||| || || ||||| || |||||||||||| ||| || ||| Sbjct 526744 AGCGAAGATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGCCTT 526803 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || |||| ||||| ||||| |||| || | ||| || || ||||| || Sbjct 526804 GACGGTCTCGATCGTGTCGCCCGAGTCGACATCGAGCGTGATCGTCTTACCCGTCAGGGT 526863 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 526864 CTTCACGAAGATCTGCAT 526881 >seq179 Length=351413 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| || | ||| | || ||||| || || || ||||| ||| | Sbjct 22452 CCACCACGCAGACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCG 22511 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || ||| |||||| |||||||| || || || Sbjct 22512 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGG 22571 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||| ||| ||| || ||| | |||| || || || || || Sbjct 22572 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTATCGCCGCTGTCCACG 22631 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| ||||| ||||| || || || || |||||||| Sbjct 22632 TCCAGTGTAATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 22678 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| || | ||| | ||| ||||| || ||||| ||||| || ||| |||||| Sbjct 23619 CGCAGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCCAGCGTGCGCCCG 23678 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||||| |||||||| || || || ||||||||||| Sbjct 23679 TCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTA 23738 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | |||| ||||| || || || || | || | | Sbjct 23739 TCCTGGATCTTGGCCTTCACCGTCTCGATCGTGTCGCCGCTGTCCACATCCAGCGTAATC 23798 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || || || |||||||| Sbjct 23799 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 23833 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| || | ||| | ||| ||||| || || || ||||| ||| | Sbjct 23376 CCACCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 23435 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| ||||| || | |||| ||||| ||||| ||||| Sbjct 23436 AGGGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAAATCAGACGCTGTTGATCAGGAGGG 23495 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| | | || |||| |||| ||||| ||||| Sbjct 23496 ATGCCCTCCTTGTCC-TGAATCTTGGCTTTGACCGTCTCGATCGTGTCGCCTGAGTCGAC 23554 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| || || || || || || |||||||| Sbjct 23555 ATCCAATGTGATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 23602 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| || | ||| | ||| ||||| || || || ||||| ||| | Sbjct 22683 CCACCACGCAGACGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCG 22742 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || ||| |||||| ||||| || || || || Sbjct 22743 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGA 22802 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTC---TCG 127063 || |||||||||||| || || ||| | ||||| ||||| || | ||| Sbjct 22803 ATACCCTCCTTGTCCTGAATCTTGGCCTTCACAGTTTCGATCGTGTC---ACCCGAGTCG 22859 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | || | || || || ||||| || || || || |||||||| Sbjct 22860 ACGTCAAGCGTAATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCAT 22909 >seq45 Length=544478 Score = 93.3 bits (102), Expect = 4e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 50660 ATGTTGCCCAGATCGCCGACGTGGCGGTCGACGGCGTTGGGAGCGCCGTGGTTGCGGCCC 50719 |||||||| || ||||||||||| || ||| | || ||| ||||| || | ||| Sbjct 517719 ATGTTGCCAAGGTCGCCGACGTGCCGCTCGGTGTCGGCGGGCGCGCCATGCGTCTTGCCG 517778 Query 50720 AACGGATTAAAGTGCTCGCCGGCCGACGTGCAGCCGTTGC-TCGTGTCGCCGAATTCGTG 50778 |||||||| ||||| |||||| ||| | ||| || |||| ||||||||||| || || Sbjct 517779 AACGGATTGTAGTGCCCGCCGGTCGATGCGCA-CCCTTGCGTCGTGTCGCCGTGCTCATG 517837 Query 50779 CACGTGGAACCCGTG 50793 |||||||| ||||| Sbjct 517838 GACGTGGAAGCCGTG 517852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475496835512080