Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq67 111 1e-19 seq179 95.1 1e-14 seq334 93.3 4e-14 >seq67 Length=308067 Score = 111 bits (122), Expect = 1e-19 Identities = 294/443 (66%), Gaps = 7/443 (2%) Strand=Plus/Plus Query 122890 TCGAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGC 122949 |||| | ||| ||||||| || || || ||||| ||||||||||| | ||| | | Sbjct 207450 TCGACGGCAAGATCGCCGAGCGCCCACAGCACATGCTGATGCGCGTCGCCGTCGGCATCC 207509 Query 122950 ACG-GACGCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTC 123008 || | || || |||| || | | |||| ||| | | ||||| | || | ||| Sbjct 207510 ACAAGTCG-GATATCGCGGCGGCCATCCAAACGTACAACCTCATGTCCGAGAAGTGGTTC 207568 Query 123009 ACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGT 123068 ||||||||| || || ||||| |||||||||| | || || |||| || || Sbjct 207569 ACGCACGCGTCCCCGACCATGTTCAACGCCGGCACGCCCGTCCCGCAAATGTCGTCCTGC 207628 Query 123069 TTTTTGCTCACCTTGCGCGAA-GACAGCATCACCGGTATCTATGAAACTTTGCGCGATTG 123127 || || | | | | ||| ||| |||| || ||||| || || ||||||| || Sbjct 207629 TTCCTGGTGGCGCT-CAAGAACGACTCCATCGAGGGCATCTACGACACGCTGCGCGAATG 207687 Query 123128 CGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCG 123187 ||| | || ||||| | | ||||||||| ||||| |||||||| |||| | | | Sbjct 207688 CGCCATCATCTCCAAGTCGGCCGGCGGCATTGGCGTCCACGTGCACAACGTGCGCGCCAC 207747 Query 123188 CGGAAGCCGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGT 123247 ||| | ||| | | || |||| | | ||| ||| ||||||| || || Sbjct 207748 CGGCTCCTACATTCGTGGTACGAACGGCACGTCGAACGGCATCGTCCCCATGCTTCGCGT 207807 Query 123248 TTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGC---AAACGCAAAGGCGCGATGGC 123304 | | || | | || ||||||||||||||||| |||||||| |||||| | || Sbjct 207808 GTTCTCCGACACTGCCCGCTACGTCGACCAGGGCGGCGGGAAACGCAAGGGCGCGTTCGC 207867 Query 123305 GATCTATCTAGAACCGTGGCACG 123327 | || || ||||||||||||| Sbjct 207868 CGTGTACCTGGAACCGTGGCACG 207890 >seq179 Length=351413 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | || || ||||||| ||| || ||||| ||||| || || ||| | Sbjct 23145 CCGCCACGCAGTCGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCG 23204 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| |||| || || || ||| | |||| || ||||||||||| ||| Sbjct 23205 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGA 23264 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || ||||| || ||||| || || | || ||| | ||||| || ||||| Sbjct 23265 ATACCCTCTTTGTCCTGAATCTTGGCCTTCACCGTTTCGATTGTGTCACCCGAGTCGACG 23324 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACCA 45350 || || |||| || || || || || || || || || || ||||||| | |||| Sbjct 23325 TCAAGCGTAATGGTCTTTCCTGTCAGCGTCTTGACGAAGATCTGCATCGTACCACCA 23381 Score = 89.7 bits (98), Expect = 5e-13 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | || || |||||||| || || ||||| ||||| || || ||| | Sbjct 22452 CCACCACGCAGACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCG 22511 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| |||| || || || ||| | |||| || |||||||||||||| Sbjct 22512 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGG 22571 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || ||||| || || || || | || || | || ||| || || Sbjct 22572 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTATCGCCGCTGTCCACG 22631 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACCA 45350 || || |||| ||| ||||| || || || || || || || ||||||| | |||| Sbjct 22632 TCCAGTGTAATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATCGTACCACCA 22688 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | || || ||||||||||| || ||||| ||||| || || ||| | Sbjct 23376 CCACCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 23435 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| |||| || ||||| || | |||| || || || || || || Sbjct 23436 AGGGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAAATCAGACGCTGTTGATCAGGAGGG 23495 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || || || ||||| || ||||| || || | |||||| || ||||| Sbjct 23496 ATGCCCTCCTTGTCCTGAATCTTGGCTTTGACCGTCTCGATCGTGTCGCCTGAGTCGACA 23555 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCG 45342 || | || | || ||||| || || || || || || || ||||||| Sbjct 23556 TCCAATGTGATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCATCG 23604 >seq334 Length=1041161 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || |||||||| || ||||| ||||| || || ||| | || || ||| Sbjct 945224 ACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCC 945165 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || || | |||| || || ||||||||||||||||| || || || || Sbjct 945164 AGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGG 945105 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || |||| || || | ||||| || ||| | || ||||| || | ||| ||| Sbjct 945104 ATCTTGGCCTTGACGGCCTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTG 945045 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATCG 45342 ||||| || || || || || |||||||||| Sbjct 945044 CCGGTAAGCGTCTTGACGAATATTTGCATCG 945014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451999431423320