Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq67 158 1e-33 seq556 111 2e-19 >seq67 Length=308067 Score = 158 bits (174), Expect = 1e-33 Identities = 672/1044 (64%), Gaps = 32/1044 (3%) Strand=Plus/Minus Query 115555 GATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAG 115614 ||||| ||||||||||| ||||||||||| || | ||||||| || | |||||| || Sbjct 209248 GATCGCAGGTAGTACATGCCCGTCTTGAGGCCTTTAGTCCAGGCGTAGAAATGCATCGAC 209189 Query 115615 GACAACTTGG-AGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGAT 115673 | || |||| | ||| | | || ||| || ||| | ||| || || || || Sbjct 209188 GTCAGCTTGCCAAAGTTAATGTCGGTC-ATGTGGACGTTGAACGATTGCGACTGGTCAAT 209130 Query 115674 GAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGT 115733 |||| || ||||| || ||||| ||||||| |||| |||||| ||||| || || Sbjct 209129 GAAGGCGCCGCGATCGGCGGCCATGTCAATCAGCGACTTCTGCTTGATCTCCCAAACGGT 209070 Query 115734 TCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGC 115793 |||| |||| ||| | ||| | ||||| | || || |||| || || || Sbjct 209069 CTTGTACAGGTCCTTGAGATCCTGCGGGATTCGGTCAATGTTCTGGACCGACCCGT-TGT 209011 Query 115794 CTTGACCATGAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTC 115850 | |||| || | | || || | ||| || || || | || ||| | Sbjct 209010 GTG--CCATCAGCTGGTGGCGCAAGTCGTCGTCCCACAGGCCCCGGTTGATCAGGTCCAC 208953 Query 115851 CACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTT 115910 || |||||||| |||| || |||||||| || || |||||| |||||||| Sbjct 208952 CAGCAGGTGCTTGTTGATGACGGTGAACTCACCAGCCAGCACACGTCTCGCGTAGATGTT 208893 Query 115911 GGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGG 115970 | ||||||| ||||| |||||||| ||||| |||| ||| ||| || || |||||||| Sbjct 208892 GCTCGTGTACGGCTCGAAGCACTCGTTGTTCCCCAGGATCTGGCTGGTTGACGCTGTGGG 208833 Query 115971 CATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGC 116030 ||| || || | || | || || | || || || |||| || || Sbjct 208832 CATCGGCGCGAGCAGCAACGAATTCCGCATGCCATGCCGGGCGATATCGGCCTTCAGCGC 208773 Query 116031 GTCCCAGTCGTAGTTGAG-CTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTT 116089 ||||||||| | | | | | | || | | |||||| || |||||||| || || | Sbjct 208772 GTCCCAGTCCCA-TCGCGACGACGGCTTTACATTCCACATGTCGAACTGGAGAATGCCCT 208714 Query 116090 GGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTC---GG 116146 ||||||| || || || | ||| || ||||| || | |||| || || Sbjct 208713 GGGACGCCGGGCTGCCAGGGAACGACTCGTAGGGGCCGTCCTTAACGGCCAGATCCTTGG 208654 Query 116147 AGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATG-CGAGCATTCATTGCCTTG 116205 || || | ||| || || || ||||| || ||| || | |||| ||| Sbjct 208653 AG---GCAGTGCAGGCCGCAAAGTAGATCGTCTCGAAGATGTCGCGG-TTCAGTGCGCGC 208598 Query 116206 GCCTCGTCGGAATCAAACGCGAGACGGCA-CAAAATAAATACATCCGCGAGACCTTGGAC 116264 ||||| || || |||| | || ||| | || || | ||||| || || ||||| Sbjct 208597 GCCTCCGGCGAGTCGAACGGGT-ACCGCATCTGGATGAAGGCGTCCGCAAGGCCCTGGAC 208539 Query 116265 ACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATA 116321 |||| || | || | |||| ||| || || | | ||| | || ||| || || Sbjct 208538 GCCGATTCCGACGGGCCTGTGTCGCATGTTCGA--TCGGCGCGCT-TCGGGCACAGGGTA 208482 Query 116322 AAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAG 116381 | | || | ||||| ||| | || || || || ||| | || | || | || Sbjct 208481 ATAGTTGCCGTCGATCACCTTGTTCAGGTTCAGCGTTACAGTGTACGTCACGTCGTACAG 208422 Query 116382 CTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGC 116441 ||| | | | || || || | ||| |||| |||| | || ||||| ||||| Sbjct 208421 CTTATGGAAGTCGAACGTGG------CGTCAGTGACGAACTTGGACAGTGCGATCGACGC 208368 Query 116442 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT 116501 ||| || || || | ||||| ||| |||||||| | |||||||| |||| || Sbjct 208367 CAGGTTGCAGACGGCCGTCTCGTCCGCCGACGTGTACTCGACGATTTCCGTGCACAGGTT 208308 Query 116502 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTA 116561 ||||| || || |||| |||||| || || ||||| |||| || || |||||||| Sbjct 208307 ACTGCTCTTGATCGTCCCCAGGTTCTTCTGGTTCGACTTGCTGTTGCAAGCGTCCTTGTA 208248 Query 116562 GAGCATATATGGCGTCCCCGTCTC 116585 | ||| || ||||||||||| || Sbjct 208247 CATCATGTAGGGCGTCCCCGTTTC 208224 Score = 131 bits (144), Expect = 2e-25 Identities = 243/354 (69%), Gaps = 7/354 (2%) Strand=Plus/Minus Query 116838 CAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC 116897 || ||||| || || | ||| |||||||||||||||||||||||||| |||| | || Sbjct 207916 CAGCTCCAGGAACTCGAAGATGTCCGCGTGCCACGGTTCCAGGTACACGGCGAACGCGCC 207857 Query 116898 CTTGCGA---CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCAT 116954 |||||| | || |||||| || || | || || || || ||||||||||| Sbjct 207856 CTTGCGTTTCCCGCCGCCCTGGTCGACGTAGCGGGCAGTGTCGGAGAACACGCGAAGCAT 207797 Query 116955 TGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTGTTGGCTCTG 117012 || | ||| || | || ||| || || || |||| || ||| | | |||| | Sbjct 207796 GGGGACGATGCCGTTCGACGTGCCGTTCGTACCACGAATGTAGGAGCC--GGTGGCGCGC 207739 Query 117013 ACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTG 117072 || | ||| | ||| | ||||| || || ||| |||| ||||| ||||| || Sbjct 207738 ACGTTGTGCACGTGGACGCCAATGCCGCCGGCCGACTTGGAGATGATGGCGCATTCGCGC 207679 Query 117073 AGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGAC 117132 || || ||||||| || ||||| ||||| ||| || | ||||||||| |||| Sbjct 207678 AGCGTGTCGTAGATGCCCTCGATGGAGTCGTTCTTGAGCGCCACCAGGAAGCAGGACGAC 207619 Query 117133 ATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 ||||| || || || || |||||||| | ||| || | |||||| ||||| Sbjct 207618 ATTTGCGGGACGGGCGTGCCGGCGTTGAACATGGTCGGGGACGCGTGCGTGAAC 207565 >seq556 Length=883518 Score = 111 bits (122), Expect = 2e-19 Identities = 174/249 (70%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 10600 GGTATTCTCTTCAACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATC 10659 || || || ||||||||||| || |||||||||||| |||||||| |||||| Sbjct 618271 GGCATCCTGTTCAACCACGAAAGCCCGCGTCGTGGCCCGACGTTCGTGACCCGCAAGATC 618212 Query 10660 ACCGATGGTATCAAACAAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTC 10719 || || || | |||| ||| || | ||| | | | | | |||||| || Sbjct 618211 ACGCGTGCCGTCGCTCGCATCGCGGCCGGCAAACAGGACTGCCTGTACCTCGGGAACATC 618152 Query 10720 AACGCCGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTC 10779 ||||| || | |||||||| |||||||||||||| || | ||||||||| | | | Sbjct 618151 GACGCCAAGCGTGACTGGGGGCACGCCAAGGACTACGTCGCTGCCATGTGGATGATGATG 618092 Query 10780 CAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAG 10839 || || || || |||| || || ||| ||||||| || ||||| ||| | ||| | || Sbjct 618091 CAGCAGGAGAAGCCGGATGACTACGTCATCGCGACCGGCGAGACGCACACGGTCCGCGAA 618032 Query 10840 TTCGTTGAG 10848 ||||| ||| Sbjct 618031 TTCGTCGAG 618023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613502084883720