Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq67 163 5e-35 seq377 102 1e-16 seq1 102 1e-16 >seq67 Length=308067 Score = 163 bits (180), Expect = 5e-35 Identities = 337/492 (68%), Gaps = 7/492 (1%) Strand=Plus/Minus Query 203836 CGTCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACA 203894 ||||||| || || ||||||| ||||||| ||||| |||| || ||| ||||||| Sbjct 209292 CGTCTTGGTCAACGGTGAACTTGATGGCGTCGACGGCGGGCCGAGATCGCAGGTAGTACA 209233 Query 203895 TGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGT 203954 |||| ||||| ||||| || ||| |||| | ||||| || | ||| |||| | || Sbjct 209232 TGCCCGTCTTGAGGCCTTTAGTCCAGGCGTAGAAATGCATCGACGTCAGCTTGCCAAAGT 209173 Query 203955 TGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCT 204013 | ||||| |||||| | ||| | || || ||||| ||| |||||||| ||||| Sbjct 209172 TAATGTCGGTCATGTGGACGTTGAACGATTGCGACTGGTCAATG-AAGGCGCCGCGATCG 209114 Query 204014 GCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTG 204073 |||||||| | || | | ||||||| |||||||| || |||||| ||| ||| || Sbjct 209113 GCGGCCATGTCAATCAGCGACTTCTGCTTGATCTCCCAAACGGTCTTGTACAGGTCCTTG 209054 Query 204074 GTGTGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCAT 204132 | || || | || | | || || || ||| ||||||| |||||||| || | Sbjct 209053 AGATCCTGCGGGA-TTCGGTCAATGTTCTGGACCGACCCGTTGTGTGCCATCAG-CTGGT 208996 Query 204133 -CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 | | || || |||||| |||| ||||||| ||| || |||||| ||||| Sbjct 208995 GGCGCAAGTCGTCGTCCCACAGGCCCCGGTTGATCAGGTCCACCAGCAGGTGCTTGTTGA 208936 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 ||| || || || | |||||| | || | | | | |||| | ||| | || |||| Sbjct 208935 TGACGGTGAACTCACCAGCCAGCACACGTCTCGCGTAGATGTTGCTCGTGTACGGCTCGA 208876 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | ||||||||| || | ||||| ||| || |||||||| || || || |||| Sbjct 208875 AGCACTCGTTGTTCCCCAGGATCTGGCTGGTTGACGCTGTGGGCATCGGCGCGAGCAGCA 208816 Query 204312 GGGAGTTGCGCA 204323 || || |||| Sbjct 208815 ACGAATTCCGCA 208804 Score = 87.8 bits (96), Expect = 3e-12 Identities = 244/369 (66%), Gaps = 4/369 (1%) Strand=Plus/Minus Query 205237 CTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCA 205295 |||||||| ||||| || || | ||||| ||||||||||| || | ||||||| | Sbjct 207922 CTTTTTCAGCTCCAGG-AACTCGAAGATGTCCGCGTGCCACGGTTCCAGGTACACGGCGA 207864 Query 205296 TTGCG-CCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACT 205354 ||| ||| || | || || |||||||| || ||| | | || ||| || Sbjct 207863 ACGCGCCCTTGCGT-TTCCCGCCGCCCTGGTCGACGTAGCGGGCAGTGTCGGAGAACACG 207805 Query 205355 CGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCA 205414 || ||||| || || | ||||| | || |||||||| | ||| ||||| Sbjct 207804 CGAAGCATGGGGACGATGCCGTTCGACGTGCCGTTCGTACCACGAATGTAGGAGCCGGTG 207745 Query 205415 GCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCAC 205474 || | ||||||| | | ||||||| ||||| | |||||| ||| |||||| Sbjct 207744 GCGCGCACGTTGTGCACGTGGACGCCAATGCCGCCGGCCGACTTGGAGATGATGGCGCAT 207685 Query 205475 TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCAC 205534 || |||| ||| ||||||||| ||||||| |||| | || | |||||| |||| Sbjct 207684 TCGCGCAGCGTGTCGTAGATGCCCTCGATGGAGTCGTTCTTGAGCGCCACCAGGAAGCAG 207625 Query 205535 GAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAG 205594 || | || | | | | ||||| |||| ||| | || ||| ||||| |||| Sbjct 207624 GACGACATTTGCGGGACGGGCGTGCCGGCGTTGAACATGGTCGGGGACGCGTGCGTGAAC 207565 Query 205595 CGCTTCTCG 205603 | ||||||| Sbjct 207564 CACTTCTCG 207556 >seq377 Length=2385 Score = 102 bits (112), Expect = 1e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 159650 TTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTC 159709 |||||||| ||||| |||||||||| | | || ||||| || |||| ||||| Sbjct 1642 TTCTCGAAGAAGTTCGTCTTGCCCTGAAGGCTGATCAGGTCCATCCACTCGAACGGGTTT 1583 Query 159710 TTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCG 159769 | || | ||| | ||||||| || || || |||||||||| ||| |||||||| ||| Sbjct 1582 TCGACTTTGTAGTGTTTCGGAAGGCCCAGCGCAGCCAGCAACCGGTCAGCCACAAACTCG 1523 Query 159770 ATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 ||||| || | ||||| | | | || || || | || ||| || ||||| || | Sbjct 1522 ATGTA-CTGCGACATCAGGAGAGAATTCATGCCAATGAGGTCAACTGGTAGCGCATCGCA 1464 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTC 159858 | || |||||||||||||| || ||||| Sbjct 1463 AACGAATTCCTTCTCAATCTCAACAGCTTC 1434 >seq1 Length=1479440 Score = 102 bits (112), Expect = 1e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 159650 TTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTC 159709 |||||||| ||||| |||||||||| | | || ||||| || |||| ||||| Sbjct 1039989 TTCTCGAAGAAGTTCGTCTTGCCCTGAAGGCTGATCAGGTCCATCCACTCGAACGGGTTT 1040048 Query 159710 TTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCG 159769 | || | ||| | ||||||| || || || |||||||||| ||| |||||||| ||| Sbjct 1040049 TCGACTTTGTAGTGTTTCGGAAGGCCCAGCGCAGCCAGCAACCGGTCAGCCACAAACTCG 1040108 Query 159770 ATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 ||||| || | ||||| | | | || || || | || ||| || ||||| || | Sbjct 1040109 ATGTA-CTGCGACATCAGGAGAGAATTCATGCCAATGAGGTCAACTGGTAGCGCATCGCA 1040167 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTC 159858 | || |||||||||||||| || ||||| Sbjct 1040168 AACGAATTCCTTCTCAATCTCAACAGCTTC 1040197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795148570393520