Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq634 147 5e-30 seq334 141 2e-28 seq179 141 2e-28 >seq634 Length=872753 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| | ||||||||||| |||| ||||||||| || | || | ||||| Sbjct 526670 AGGACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCATCC 526729 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| |||||||| ||||||||| ||| || || ||| Sbjct 526730 TCGAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCC 526789 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| |||| |||| ||||| | || ||||| | |||||||||| Sbjct 526790 TGGATCTTGGCCTTGACGGTCTCGATCGTGTCGCCCGAGTCGACATCGAGCGTGATCGTC 526849 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || || ||||| || || || Sbjct 526850 TTACCCGTCAGGGTCTTCACGAAGATCTG 526878 >seq334 Length=1041161 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||||||||||| || |||||||| |||| ||||||||| || | || Sbjct 527570 CGAAGACGAAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTG 527511 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || || ||||| |||||||||||||| || || ||| Sbjct 527510 CGCCCGTCCTCCAGCTGCTTCCCCGCAAAGATCAGACGCTGCTGGTCTGGCGGGATGCCT 527451 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| || | |||| |||||| | || ||||||| Sbjct 527450 TCCTTGTCCTGAATCTTCGCCTTGACAGTCTCGATGGTGTCACCAGAATCGACATCCAGA 527391 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || ||||| || || || Sbjct 527390 GTGATGGTCTTCCCAGTGAGCGTCTTCACGAAGATCTG 527353 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| ||||| || ||||||||||| |||| ||||||||| |||| || Sbjct 945236 CGAAGGCGAAGGACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTG 945177 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || || ||||| |||||||| |||||||| ||| || Sbjct 945176 CGGCCGTCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCC 945117 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| |||| |||| ||||| | | | ||||| | Sbjct 945116 TCCTTGTCCTGGATCTTGGCCTTGACGGCCTCGATCGTGTCCGACGACGCCACATCGAGT 945057 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || || || || || || ||||| Sbjct 945056 GTGATCGTCTTGCCGGTAAGCGTCTTGACGAATATTTG 945019 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| |||||||| || ||||||||||| |||| |||||||| || | ||| Sbjct 526646 CGGAGACGCAGAACAAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGGCTAGCGTC 526587 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| ||||||||||| || ||||||||||| || ||| || Sbjct 526586 CGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGAATACCC 526527 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||||| |||| ||||| | || || || | | Sbjct 526526 TCCTTGTCCTGGATCTTGGCCTTCACGGTCTCGATCGTGTCACCGCTGTCGACGTCGAGC 526467 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| ||||| || || ||||| || || || Sbjct 526466 GTAATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTG 526429 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| |||||| ||||| || ||||| || || |||| ||||||||| || | || Sbjct 527108 CGAAGTCGCAGGACGAGGTGAAGCGTCGATTCTTTCTGGATGTTGTAGTCGGCAAGCGTG 527049 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || ||||| || ||||| |||||||| |||||||||||||| || || Sbjct 527048 CGCCCATCCTCGAGCTGTTTGCCGGCAAAGATGAGTCGCTGCTGGTCCGGCGGGATACCC 526989 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| || || ||| || | |||| |||||| | || || |||| | Sbjct 526988 TCCTTGTCCTGGATTTTCGCCTTGACAGTCTCGATGGTGTCACCAGAGTCGACGTCCAGC 526929 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| || || || || || || || Sbjct 526928 GTGATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTG 526891 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||| || ||||| ||||||||||| || |||| ||||||||| || | || Sbjct 527339 CGAAGACGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCAAGCGTG 527280 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || ||||||||||| |||||||| |||||||| ||||| || || || Sbjct 527279 CGTCCATCCTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGGTCGGGCGGGATGCCC 527220 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| || || ||| || | |||| || || | || || |||| | Sbjct 527219 TCCTTGTCCTGGATTTTCGCCTTGACAGTCTCGATCGTATCACCAGAGTCGACGTCCAGC 527160 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| || || ||||| || || || Sbjct 527159 GTGATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTG 527122 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||| || ||||| || ||||| ||||| || | ||||||||| || | || Sbjct 526877 CGAAGACGCAGAACGAGGTGAAGCGTCGATTCCTTCTGAATGTTGTAGTCGGCGAGTGTG 526818 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || || ||||| ||||||||||||||||| || || Sbjct 526817 CGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGCGGGATACCC 526758 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || | |||| ||||| | || || || | | Sbjct 526757 TCCTTGTCCTGGATCTTCGCCTTGACCGTCTCGATCGTGTCGCCGGAGTCGACGTCGAGC 526698 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || ||||| || || || Sbjct 526697 GTGATGGTCTTCCCGGTCAAGGTCTTCACGAAGATCTG 526660 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || |||||||| ||||||||| | || |||||| | || | ||||| |||||| ||||| Sbjct 527245 CTGATCTTCGCTGGAAAGCAGCTCGAGGATGGACGCACGCTTGCCGACTACAACATCCAG 527304 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 |||||||| ||||| ||||| || || | ||||| Sbjct 527305 AAAGAGTCGACTCTGCACCTGGTGCTGCGTCTTCG 527339 >seq179 Length=351413 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| | ||| || ||||||||||| |||| |||||| || ||||| || Sbjct 22920 CGCAGACGCAGGACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTT 22979 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| |||||| ||||||||||| |||||||| || || ||| || || Sbjct 22980 CGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGTTGATCAGGAGGGATACCC 23039 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| |||||| | |||| ||||| || || |||||||| Sbjct 23040 TCCTTATCCTGAATCTTGGCCTTCACCGTCTCGATCGTGTCGCCTGAGTCGACATCCAAT 23099 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || || || || || || Sbjct 23100 GTGATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTG 23137 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| ||| || || || | ||||||||||| |||| ||||||||| || | || Sbjct 23151 CGCAGTCGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTG 23210 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| ||||||||||| ||||||||||||||||| ||| || Sbjct 23211 CGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATACCC 23270 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||||||||| |||||| | ||||| ||||| | || || || | | Sbjct 23271 TCTTTGTCCTGAATCTTGGCCTTCACCGTTTCGATTGTGTCACCCGAGTCGACGTCAAGC 23330 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || || || || Sbjct 23331 GTAATGGTCTTTCCTGTCAGCGTCTTGACGAAGATCTG 23368 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| || || || ||||||||||| || | ||||||||| |||| || Sbjct 23613 CGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCCAGCGTG 23672 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||| ||||| |||||||||||||| || || || Sbjct 23673 CGCCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCC 23732 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| | |||| ||||| | || ||||||| | Sbjct 23733 TCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTGTCGCCGCTGTCCACATCCAGC 23792 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| ||||| || || ||||| || || || Sbjct 23793 GTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTG 23830 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| || || || ||||||||||| |||| ||||||||| || | || Sbjct 22458 CGCAGACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTG 22517 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| ||||||||||| ||||||||||||||||| || || Sbjct 22518 CGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCC 22577 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| | |||| || || | || || |||| Sbjct 22578 TCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTATCGCCGCTGTCCACGTCCAGT 22637 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| ||||| || || || || || || || Sbjct 22638 GTAATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTG 22675 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| || || || ||||||||||| |||| ||||||||| || | || Sbjct 23382 CGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTG 23441 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||||||||| || || |||||||| || || ||| || || Sbjct 23442 CGACCATCCTCCAGCTGCTTTCCGGCAAAAATCAGACGCTGTTGATCAGGAGGGATGCCC 23501 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| || || | |||| ||||| || || |||||||| Sbjct 23502 TCCTTGTCCTGAATCTTGGCTTTGACCGTCTCGATCGTGTCGCCTGAGTCGACATCCAAT 23561 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || || || || || || || Sbjct 23562 GTGATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTG 23599 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || || | ||||||||||| |||| ||||||||| || | || Sbjct 22689 CGCAGACGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTG 22748 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| ||||||||||| |||||||| |||||||| ||| || Sbjct 22749 CGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGAATACCC 22808 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| |||||| | ||||| ||||| | || || || | | Sbjct 22809 TCCTTGTCCTGAATCTTGGCCTTCACAGTTTCGATCGTGTCACCCGAGTCGACGTCAAGC 22868 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || || || || Sbjct 22869 GTAATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTG 22906 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||||||||| ||||||||||| ||||| | || ||||||||||||||| ||||| Sbjct 23014 CTGATCTTCGCCGGCAAGCAGTTGGAGGATGGCCGAACCTTGGCCGATTACAACATCCAG 22955 Query 200995 AAAGAGTCTACTCTTCAC 201012 || ||||| || |||||| Sbjct 22954 AAGGAGTCGACACTTCAC 22937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178911525009689