Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq334 163 3e-35 seq179 159 4e-34 seq634 156 5e-33 >seq334 Length=1041161 Score = 163 bits (180), Expect = 3e-35 Identities = 168/217 (77%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| || || |||| || |||||| |||||||||||||||| ||| || ||| | Sbjct 526641 ACGCAGAACAAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGGCTAGCGTCCGCCC 526582 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||||||||| |||| |||||||||||||| ||| | | |||||| Sbjct 526581 GTCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGAATACCCTCCTT 526522 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT-TCCACATCCACCGTGA 46556 |||| |||||| ||| | ||| | | |||||| | || | || || || | ||| | Sbjct 526521 GTCCTGGATCTTGGCCTTCACGGTCTCGATCGTGTCAC-CGCTGTCGACGTCGAGCGTAA 526463 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||||||||| || || || ||||| ||||| Sbjct 526462 TGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 526426 Score = 156 bits (172), Expect = 5e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||||| |||| || ||| || ||||| |||||||||| || ||||| | Sbjct 527334 ACGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGTCC 527275 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || ||||||||||| || ||||| |||| ||||| ||||||| ||| | || |||||| Sbjct 527274 ATCCTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGGTCGGGCGGGATGCCCTCCTT 527215 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| ||| ||| ||||| ||| | | ||| || | || || || |||| |||||| Sbjct 527214 GTCCTGGATTTTCGCCTTGACAGTCTCGATCGTATCACCAGAGTCGACGTCCAGCGTGAT 527155 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||||||||| || || || ||||| ||||| Sbjct 527154 CGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 527119 Score = 140 bits (154), Expect = 4e-28 Identities = 160/214 (75%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || ||||| |||||||||| || |||||| | || |||||||| |||||||| || Sbjct 527078 TCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGCCCATCCTCGAGCTGTTTGCCGGCAAAG 527019 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||| | ||| | | |||||||||| ||| ||| ||||| ||| Sbjct 527018 ATGAGTCGCTGCTGGTCCGGCGGGATACCCTCCTTGTCCTGGATTTTCGCCTTGACAGTC 526959 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | || || || |||| |||||| || ||||||||||| || || || Sbjct 526958 TCGATGGTGTCACCAGAGTCGACGTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTGACG 526899 Query 46583 AAGATTTGCAT-TTTGCACAAACAACACGCCGAA 46615 ||||| ||||| || ||| | || |||| ||| Sbjct 526898 AAGATCTGCATCGTTCCACCACGAAGACGCAGAA 526865 Score = 138 bits (152), Expect = 1e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || |||||||||| || ||||| | || || ||||||||||| || || Sbjct 526847 TCCTTCTGAATGTTGTAGTCGGCGAGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAG 526788 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| ||||||||||| | ||| | | |||||||||| ||||||| ||||| |||| Sbjct 526787 ATCAGACGCTGCTGGTCCGGCGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACCGTC 526728 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||||| || || || || | ||||||||| || || |||| || || || Sbjct 526727 TCGATCGTGTCGCCGGAGTCGACGTCGAGCGTGATGGTCTTCCCGGTCAAGGTCTTCACG 526668 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 526667 AAGATCTGCAT 526657 Score = 134 bits (148), Expect = 2e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | || |||||| |||| || |||||||| || || || Sbjct 527541 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAA 527482 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||| | ||| | || ||||||||| |||||| ||||| || Sbjct 527481 GATCAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGAATCTTCGCCTTGACAGT 527422 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | || || ||||||| |||||||| || || || ||||| || || Sbjct 527421 CTCGATGGTGTCACCAGAATCGACATCCAGAGTGATGGTCTTCCCAGTGAGCGTCTTCAC 527362 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 527361 GAAGATCTGCAT 527350 >seq179 Length=351413 Score = 159 bits (176), Expect = 4e-34 Identities = 167/217 (77%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| || ||||||| ||| |||||| ||||| |||||||||| || ||||| | Sbjct 22463 ACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACC 22522 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||||||||| |||| ||||||||||| | ||| | || |||||| Sbjct 22523 ATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTT 22582 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT-TCCACATCCACCGTGA 46556 ||| |||||| ||| | |||| | | ||| |||| || | ||||| |||| || | Sbjct 22583 ATCCTGGATCTTGGCCTTCACCGTCTCGATCGTATCGC-CGCTGTCCACGTCCAGTGTAA 22641 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || |||||||||||||| || || ||||| ||||| Sbjct 22642 TCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 22678 Score = 159 bits (176), Expect = 4e-34 Identities = 167/217 (77%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| || ||||||| || |||||| || || |||||||| | || |||||| | Sbjct 23618 ACGCAGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCCAGCGTGCGCCC 23677 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || |||||||||||||| || |||| ||||||||||| | ||| | || |||||| Sbjct 23678 GTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 23737 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT-TCCACATCCACCGTGA 46556 ||| |||||| ||| | |||| | | |||||||| || | |||||||||| ||| | Sbjct 23738 ATCCTGGATCTTGGCCTTCACCGTCTCGATCGTGTCGC-CGCTGTCCACATCCAGCGTAA 23796 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || ||||||||||| || || || ||||| ||||| Sbjct 23797 TCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 23833 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| || |||||||| || |||||| ||||| |||||||||| || ||||| | Sbjct 22694 ACGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACC 22753 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||||||||| |||| ||||| ||||| | || | | |||||| Sbjct 22754 ATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGAATACCCTCCTT 22813 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| ||||| ||| | || | | |||||| | ||| || || || | ||| || Sbjct 22814 GTCCTGAATCTTGGCCTTCACAGTTTCGATCGTGTCACCCGAGTCGACGTCAAGCGTAAT 22873 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || |||||||| || || ||||| ||||| Sbjct 22874 GGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCAT 22909 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || |||||||| || |||||| ||||| |||||||||| || ||||| | Sbjct 23157 CGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCA 23216 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| |||| ||||||||||| | || | | ||| ||| Sbjct 23217 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCTTTG 23276 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||||| ||| | ||| | | ||||| | ||| || || || | ||| ||| Sbjct 23277 TCCTGAATCTTGGCCTTCACCGTTTCGATTGTGTCACCCGAGTCGACGTCAAGCGTAATG 23336 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || |||||||| || || ||||| ||||| Sbjct 23337 GTCTTTCCTGTCAGCGTCTTGACGAAGATCTGCAT 23371 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||| || | ||| |||||| ||||| ||||| |||| | || || | Sbjct 22925 ACGCAGGACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCC 22984 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | ||||||||||||||| |||| ||||| || || | || | | |||||| Sbjct 22985 ATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGTTGATCAGGAGGGATACCCTCCTT 23044 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||||| ||| | |||| | | |||||||| || || ||||||| ||||| Sbjct 23045 ATCCTGAATCTTGGCCTTCACCGTCTCGATCGTGTCGCCTGAGTCGACATCCAATGTGAT 23104 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || |||||||| || || ||||| ||||| Sbjct 23105 GGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCAT 23140 >seq634 Length=872753 Score = 156 bits (172), Expect = 5e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || || ||||| || |||||| ||||| |||||||||| || |||||| | || ||| Sbjct 526673 ACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCATCCTCG 526732 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| ||||| |||| ||||| ||||| | || | | |||||||||| | Sbjct 526733 AGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGG 526792 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| ||| | | |||||||| ||| || ||||| | |||||| || || Sbjct 526793 ATCTTGGCCTTGACGGTCTCGATCGTGTCGCCCGAGTCGACATCGAGCGTGATCGTCTTA 526852 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| || || || ||||| ||||| Sbjct 526853 CCCGTCAGGGTCTTCACGAAGATCTGCAT 526881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565233687324840