Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq179 143 3e-29 seq334 131 2e-25 seq634 125 7e-24 seq45 102 8e-17 seq377 89.7 5e-13 seq1 89.7 5e-13 >seq179 Length=351413 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || || || ||||| || | |||||||| | Sbjct 23371 ATGCAGATCTTCGTCAAGACGCTGACAGGAAAGACCATTACGCTTGACGTCGACTCGGGT 23312 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||||| | || | || || | ||||||||||| |||||| | ||||| Sbjct 23311 GACACAATCGAAACGGTGAAGGCCAAGATTCAGGACAAAGAGGGTATTCCCCCGGACCAG 23252 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| |||||||| || | ||||||||| |||||||||| Sbjct 23251 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTCGCCGACTACAAC 23192 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| ||||| ||||| | || ||||| || | ||||| Sbjct 23191 ATCCAGAAGGAGTCGACGTTGCATCTCGTTCTGCGACTGCGTGGCGG 23145 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| |||||||| |||||||| | || ||||| | | Sbjct 23602 ATGCAGATCTTCGTCAAGACGCTTACGGGCAAGACCATCACATTGGATGTCGACTCAGGC 23543 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | |||| || || | ||||| ||||| || || | || ||| Sbjct 23542 GACACGATCGAGACGGTCAAAGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAA 23483 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| || || || |||||||| || | ||||||||| |||||||||| Sbjct 23482 CAGCGTCTGATTTTTGCCGGAAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAAC 23423 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| ||||||||||| | || |||||| || | || || Sbjct 23422 ATCCAGAAGGAGTCGACGCTGCATCTCGTCCTGCGTCTGCGTGGTGG 23376 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || || || ||||| || | |||||||| | Sbjct 22909 ATGCAGATCTTCGTCAAGACGCTGACAGGGAAGACCATTACGCTTGACGTCGACTCGGGT 22850 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | |||| | || | || || | ||||| ||||| |||||| | |||||| Sbjct 22849 GACACGATCGAAACTGTGAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAA 22790 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| |||||||| || | ||||||||| |||||||||| Sbjct 22789 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAAC 22730 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| ||||| ||||| | || |||||| || | || || Sbjct 22729 ATCCAGAAGGAGTCGACGTTGCATCTCGTTCTGCGTCTGCGTGGTGG 22683 Score = 132 bits (146), Expect = 5e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| |||||||| || || || | ||||| || | | Sbjct 22678 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACGATTACACTGGACGTGGACAGCGGC 22619 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACCA 38362 || | | | ||| | || | || |||| || || ||||| || ||||||| |||| Sbjct 22618 GATACGATCGAGACGGTGAAGGCCAAGATCCAGGATAAGGAGGGCAT-CCCGCCGGACCA 22560 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| || | ||||||||| ||||||||| Sbjct 22559 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAA 22500 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCCGC 38474 |||||| ||||| |||| |||||| | || |||||| || | || || ||| Sbjct 22499 CATCCAGAAGGAGTCGACACTGCATCTCGTCCTGCGTCTGCGTGGTGGTCGC 22448 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| || || || | || || || | | Sbjct 23833 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACGATTACGCTGGATGTGGACAGCGGC 23774 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | ||| | || | || |||| || || ||||| || |||||| ||||| Sbjct 23773 GACACGATCGAGACGGTGAAGGCCAAGATCCAGGATAAGGAGGGCAT-CCCGCCTGACCA 23715 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| |||||||| |||| |||||| || |||||||| Sbjct 23714 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGGCGCACGCTGGCGGACTACAA 23655 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| ||||||||||| | || |||||| || | ||||| Sbjct 23654 CATTCAGAAGGAGTCGACGCTGCATCTCGTCCTGCGTCTGCGTGGCGG 23607 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || || || |||||||| | || ||||| | | Sbjct 23140 ATGCAGATCTTCGTCAAGACGCTGACAGGGAAGACCATCACATTGGATGTCGACTCAGGC 23081 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || || | || || ||||| || || | || ||| Sbjct 23080 GACACGATCGAGACGGTGAAGGCCAAGATTCAGGATAAGGAGGGTATCCCTCCTGATCAA 23021 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||| |||| || | || ||| | ||| |||||| Sbjct 23020 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGCCGAACCTTGGCCGATTACAAC 22961 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| |||| || || ||||| |||||| || | || || Sbjct 22960 ATCCAGAAGGAGTCGACACTTCACTTGGTCCTGCGTCTGCGTGGTGG 22914 >seq334 Length=1041161 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| || ||||| | |||||||| | Sbjct 526888 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACGATCACGCTGGACGTCGACTCTGGT 526947 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACCA 38362 |||| | | | || | || | ||||||| ||||| ||||| || ||||||| |||| Sbjct 526948 GACACCATCGAGACTGTCAAGGCGAAAATCCAGGACAAGGAGGGTAT-CCCGCCGGACCA 527006 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || ||||||||||| || || | |||||| || ||||||||| Sbjct 527007 GCAGCGACTCATCTTTGCCGGCAAACAGCTCGAGGATGGGCGCACGCTTGCCGACTACAA 527066 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || ||| ||||||| || | || ||||| Sbjct 527067 CATCCAGAAAGAATCGACGCTTCACCTCGTCCTGCG 527102 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || |||||||| |||||||||| || | Sbjct 526657 ATGCAGATCTTCGTGAAGACCTTGACCGGGAAGACCATCACGCTCGACGTCGACTCCGGC 526716 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACCA 38362 |||| | | ||| | || | || |||| ||||| ||||| || ||||||| |||| Sbjct 526717 GACACGATCGAGACGGTCAAGGCGAAGATCCAGGACAAGGAGGGTAT-CCCGCCGGACCA 526775 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| ||||| || || | ||||| ||| ||||||||| Sbjct 526776 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACACTCGCCGACTACAA 526835 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || |||||| ||||||| || | || |||||| Sbjct 526836 CATTCAGAAGGAATCGACGCTTCACCTCGTTCTGCGT 526872 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||| || ||||| || ||||| || ||||| |||| || | | | | Sbjct 945016 ATGCAAATATTCGTCAAGACGCTTACCGGCAAGACGATCACACTCGATGTGGCGTCGTCG 945075 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || |||| ||||| ||||| ||||| | |||||| Sbjct 945076 GACACGATCGAGGCCGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAA 945135 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || |||||||| |||| ||||| || |||||||||| Sbjct 945136 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGCACGCTGGCCGACTACAAC 945195 Query 38424 ATCCAAAAGGAAGCGACGCTGCA 38446 ||||| ||||| |||||||||| Sbjct 945196 ATCCAGAAGGAGTCGACGCTGCA 945218 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| || ||||| | |||||||| | Sbjct 527119 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACGATCACGCTGGACGTCGACTCTGGT 527178 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | || | || | ||||||| ||||| ||||| || || |||||||| Sbjct 527179 GATACGATCGAGACTGTCAAGGCGAAAATCCAGGACAAGGAGGGCATCCCGCCCGACCAA 527238 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| || || ||||| || || | ||||| || |||||||||| Sbjct 527239 CAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAGGATGGACGCACGCTTGCCGACTACAAC 527298 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || || |||| ||||| ||||||||||| | | ||||| Sbjct 527299 ATCCAGAAAGAGTCGACTCTGCACCTGGTGCTGCGTCTTCGTGGCGG 527345 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || |||||||| || || |||||||| | || ||||| | Sbjct 527350 ATGCAGATCTTCGTGAAGACGCTCACTGGGAAGACCATCACTCTGGATGTCGATTCTGGT 527409 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | | || | || | || || | ||||| || || || |||||| ||||| Sbjct 527410 GACACCATCGAGACTGTCAAGGCGAAGATTCAGGACAAGGAAGGCAT-CCCGCCAGACCA 527468 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||||| || |||||||| |||| |||||| ||| |||||||| Sbjct 527469 GCAGCGTCTGATCTTTGCGGGGAAGCAGCTGGAGGACGGGCGCACGCTCGCGGACTACAA 527528 Query 38423 CATCCAAAAGGA 38434 |||||| ||||| Sbjct 527529 CATCCAGAAGGA 527540 >seq634 Length=872753 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || ||||| || || ||||| |||| ||||| | | Sbjct 526881 ATGCAGATCTTCGTGAAGACCCTGACGGGTAAGACGATCACGCTCGATGTCGACTCGGGC 526822 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | || | || | || |||| ||||| ||||| ||||| | |||||| Sbjct 526821 GACACGATCGAGACCGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAA 526762 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||||| || || | |||||| ||| |||||||||| Sbjct 526761 CAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGGCGCACGCTCGCCGACTACAAC 526702 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| ||||| |||| | || || ||| || | || || Sbjct 526701 ATCCAGAAGGAGTCGACGTTGCACCTCGTCCTCCGTCTGCGTGGTGG 526655 >seq45 Length=544478 Score = 102 bits (112), Expect = 8e-17 Identities = 123/160 (77%), Gaps = 12/160 (8%) Strand=Plus/Plus Query 107665 TGAGGTTGCCCAGGTCGCCGACGTGCCTGATCTCGGCGTCGG---GCGCGCCGTG-GTCG 107720 ||| |||||| |||||||||||||||| ||||| ||||| ||||||| || ||| Sbjct 517717 TGATGTTGCCAAGGTCGCCGACGTGCCG---CTCGGTGTCGGCGGGCGCGCCATGCGTCT 517773 Query 107721 CGCTTCGT-CGGGTTGAAATGCTCGCCGGCCGACGTGCAGCCGTTGC-TCGCGTCGCCGA 107778 || || ||| ||| | ||| |||||| ||| | ||| || |||| ||| ||||||| Sbjct 517774 TGC--CGAACGGATTGTAGTGCCCGCCGGTCGATGCGCACCC-TTGCGTCGTGTCGCCGT 517830 Query 107779 ACTCGTGCACGTGGAAGCCGTGCAGGCCGCGCGGCAGGCC 107818 ||| || ||||||||||||||| ||||| ||| ||| || Sbjct 517831 GCTCATGGACGTGGAAGCCGTGCTGGCCGGGCGTCAGCCC 517870 >seq377 Length=2385 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 133306 CTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG- 133364 || ||||| || |||||||| |||| |||||||||||| | ||||| ||||| ||||| Sbjct 808 CTTGCGGCAAAGAAGGCCAGGACGTTCTTGATGAAATGTCTCTCGTCATCGTT-AAGCGC 750 Query 133365 CTCCCAGTCGCGCGTGTCCTTG-GACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCT 133423 | |||| || | ||| |||| |||||||| | ||| || ||||||| ||||| || Sbjct 749 CGCCCAATC-CTTGTGATCTTGCGACAGGTCAATCTCTTCCGCGGTCCAGAACGATGCGA 691 Query 133424 CGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGC 133483 | ||| |||||||| ||| | | |||| | ||||| || | || |||||| Sbjct 690 CATGTTTCTTGTACATCTCCCAAACGGATGAATGCTCGATGGGGAAGAGGACGAACCGGT 631 Query 133484 GGGGGTTTTC 133493 ||||| || Sbjct 630 TCGGGTTCTC 621 >seq1 Length=1479440 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 133306 CTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG- 133364 || ||||| || |||||||| |||| |||||||||||| | ||||| ||||| ||||| Sbjct 1040823 CTTGCGGCAAAGAAGGCCAGGACGTTCTTGATGAAATGTCTCTCGTCATCGTT-AAGCGC 1040881 Query 133365 CTCCCAGTCGCGCGTGTCCTTG-GACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCT 133423 | |||| || | ||| |||| |||||||| | ||| || ||||||| ||||| || Sbjct 1040882 CGCCCAATC-CTTGTGATCTTGCGACAGGTCAATCTCTTCCGCGGTCCAGAACGATGCGA 1040940 Query 133424 CGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGC 133483 | ||| |||||||| ||| | | |||| | ||||| || | || |||||| Sbjct 1040941 CATGTTTCTTGTACATCTCCCAAACGGATGAATGCTCGATGGGGAAGAGGACGAACCGGT 1041000 Query 133484 GGGGGTTTTC 133493 ||||| || Sbjct 1041001 TCGGGTTCTC 1041010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500168629809280