Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq67 104 3e-17 >seq67 Length=308067 Score = 104 bits (114), Expect = 3e-17 Identities = 295/448 (66%), Gaps = 9/448 (2%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||||||| ||||| | ||||| ||||| |||| ||||| | ||||| | | | Sbjct 207472 CCCACAGCACATGCTGATGCGCGTCGCCGTCGGCATCCACAAGTCGGATATCGCGGCGGC 207531 Query 111671 TTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCT 111729 | | || ||| || |||||| | || ||||| ||||| | || ||| | | Sbjct 207532 CATCCAAACGTACAACCTCATGTCCGAGAAGTG-GTTCACGCACGCGTCCCCGACCATGT 207590 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 ||||||| || || || || |||||||| || ||||| | || |||| | | Sbjct 207591 TCAACGCCGGCACGCCCGTCCCGCAAATGTCGTCCTGCTTCCTGGTGGCGCTCAAGAACG 207650 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 | || ||| | ||||| |||| ||| || ||||| ||| ||||| |||| ||| | Sbjct 207651 ACTCCATCGAGGGCATCTACGACACGCTGCGCGAATGCGCCATCATCTCCAAGTCGGCCG 207710 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTAC 111907 | || || || | ||| | || | || | |||| | | ||| || || | ||||| Sbjct 207711 GCGGCATTGGCGTCCACGTGCACAACGTGCGCGCCACC--GGCTCCTACATTCGTGGTAC 207768 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 || || || | || || | || ||||||||||| || || ||| || ||||| Sbjct 207769 GAACGGCACGTCGAACGGCATCGTCCCCATGCTTCGCGTGTTCTCCGACACTGCCCGCTA 207828 Query 111968 TGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 112024 || |||| | || | |||||||| | |||| || || || || || ||||| Sbjct 207829 CGTCGACCAGGGCGGCGGGAAACGCAAGGGCGCGTTCGCCGTGTACCTGGAACCGTGGCA 207888 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTG 112052 |||||| ||| | |||||||| ||| || Sbjct 207889 CGCGGACATCTTCGAGTTCCTGGAGCTG 207916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620737224560240