Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq67 138 1e-27 >seq67 Length=308067 Score = 138 bits (152), Expect = 1e-27 Identities = 287/424 (68%), Gaps = 4/424 (1%) Strand=Plus/Minus Query 106442 TCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTA 106501 ||| |||| |||| | || ||||| || |||| ||||| || |||||||| ||| Sbjct 208399 TCAGTGACGAACTTGGACAGTGCGATCGACGCCAGGTTGCAGACGGCCGTCTCGTCCGCC 208340 Query 106502 TCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTT 106561 |||||||| | ||||| || |||| ||| ||||| |||||||||| ||||| Sbjct 208339 GACGTGTACTCGACGATTTCCGTGCACAGGTTACTGCTCTTGATCGTCCCCAGGTTCTTC 208280 Query 106562 TGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTC 106621 ||||| ||| ||||||| || |||||||| | |||||||||||||||||| || | Sbjct 208279 TGGTTCGACTTGCTGTTGCAAGCGTCCTTGTACATCATGTAGGGCGTCCCCGTTTCGACC 208220 Query 106622 TGTGACTTGAGAATTGCCTTCCACACAT-CGGCG-GCTGGTACAATGGCGTTGGCCCGTC 106679 || | || || || || ||||| | | ||| ||| | | ||||| ||| | Sbjct 208219 TGGGCCTCCAGGATCGCGAACCACAGGTCCTGCGCCCTGATCGTCTTACGTTG--CCGGC 208162 Query 106680 CCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGAC 106739 |||| ||| || | | | || || | ||||| || ||| |||| | |||| Sbjct 208161 CCTCGTTCTCATAGCGTTCGAACAGCGCAGCGAACTCGTCGCCCCAGACGTCCGCCAGAC 208102 Query 106740 CTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGA 106799 | || |||| || || ||||| | ||||| || | | ||| || |||| ||||| Sbjct 208101 CGGGCGCCTCGTTCGGGCAGAACAACGACCAGTGGGCGTCGGCCTGCACACGCTGCATGA 208042 Query 106800 AAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTT 106859 | || || |||||||| ||| |||| || || | | || ||||||| | || | Sbjct 208041 ACAGATCGGGAATCCAAAGGCCGTAAAACAGGTCACGAGCACGTTCCTCTTCCTTGCCGT 207982 Query 106860 GGTT 106863 |||| Sbjct 207981 GGTT 207978 Score = 86.0 bits (94), Expect = 7e-12 Identities = 282/435 (65%), Gaps = 5/435 (1%) Strand=Plus/Minus Query 106873 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 106932 ||| |||||||| | ||| ||||||||||| || || || || || |||| | ||||| Sbjct 207913 CTCCAGGAACTCGAAGATGTCCGCGTGCCACGGTTCCAGGTACACGGCGAACGCGCCCTT 207854 Query 106933 TCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 106989 || | || | || | || ||||| || ||| || || ||||||||||| || Sbjct 207853 GCGTTTCCCGCCGCCCTGGTCGACGTAGCGGGCAGTGTCGGAGAACACGCGAAGCATGGG 207794 Query 106990 AATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATC 107049 | || || | || || || || || ||||| || |||| | ||| | Sbjct 207793 GACGATGCCGTTCGACGTGCCGTTCGTACCACGAATGTAGGAGCCGGTGGCGCGCACGTT 207734 Query 107050 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 107109 || | ||| | ||||| || || ||| |||| ||||| || || || || || Sbjct 207733 GTGCACGTGGACGCCAATGCCGCCGGCCGACTTGGAGATGATGGCGCATTCGCGCAGCGT 207674 Query 107110 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 107169 | ||||| || | ||| ||||| | |||| || | |||||||| ||||| || Sbjct 207673 GTCGTAGATGCCCTCGATGGAGTCGTTCTTGAGCGCCACCAGGAAGCAGGACGACATTTG 207614 Query 107170 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGG 107228 ||| || || || || ||||| | ||| || | ||||| ||||| || | | || Sbjct 207613 CGGGACGGGCGTGCCGGCGTTGAACATGGTCGGGGACGCGTGCGTGAAC-CACTTCTCGG 207555 Query 107229 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCA 107288 |||| || ||| || | | | | | | || || | ||||||||||| ||| | Sbjct 207554 ACATGAGGTTGTACGTTTGGATGGCCGCCGCGATATCCGACTTGTGGATGCCGACGGCGA 207495 Query 107289 CACGCATAAACATGT 107303 | ||||| | ||||| Sbjct 207494 CGCGCATCAGCATGT 207480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589975881035080