Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq334 138 3e-27 seq634 131 4e-25 seq179 125 2e-23 >seq334 Length=1041161 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||| |||||||| || || ||||| |||||||| || | ||||| ||| Sbjct 527327 ACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGTCCATCCTCG 527268 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || |||||||| || || ||||| || ||||| || Sbjct 527267 AGCTGCTTTCCAGCGAAGATCAGACGCTGTTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 527208 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| |||||| |||| || || || | || || || || || | |||||| Sbjct 527207 ATTTTCGCCTTGACAGTCTCGATCGTATCACCAGAGTCGACGTCCAGCGTGATCGTCTTG 527148 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 527147 CCCGTCAGGGTCTTCACGAAGATCTGCAT 527119 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| ||||| || || | || || || Sbjct 945224 ACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCC 945165 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || ||||| || || |||||||| || |||||||| || ||||| || Sbjct 945164 AGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGG 945105 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||| ||| || |||||||| |||| || || || | |||||| Sbjct 945104 ATCTTGGCCTTGACGGCCTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTG 945045 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 945044 CCGGTAAGCGTCTTGACGAATATTTGCAT 945016 >seq634 Length=872753 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| | || ||||| || || || ||||| ||||| || || | |||||| ||| Sbjct 526673 ACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCATCCTCG 526732 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || |||||||| |||||||| || || ||||| || Sbjct 526733 AGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGG 526792 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGT---CCGAACTTTCCACTTCAAGGGTAACCGTC 195108 || || ||||||| |||| || |||| |||| || || || || || | |||| Sbjct 526793 ATCTTGGCCTTGACGGTCTCGATCGTGTCGCCCGA---GTCGACATCGAGCGTGATCGTC 526849 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 526850 TTACCCGTCAGGGTCTTCACGAAGATCTGCAT 526881 >seq179 Length=351413 Score = 125 bits (138), Expect = 2e-23 Identities = 161/221 (73%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || ||| || || | || ||||| || || || ||||| ||||| || || | Sbjct 23154 AGTCGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGG 23213 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || |||||||| || |||||||| || || || ||||| || ||||| || ||| Sbjct 23214 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCT 23273 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTCAAGG 195099 ||||| ||||| || ||| || | || || ||||| ||| || || ||||| Sbjct 23274 TTGTCCTGAATCTTGGCCTTCACCGTTTCGATTGTGTCACCCGAG---TCGACGTCAAGC 23330 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||||||||||| || || ||||| | ||||| Sbjct 23331 GTAATGGTCTTTCCTGTCAGCGTCTTGACGAAGATCTGCAT 23371 Score = 102 bits (112), Expect = 2e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || ||||| || || || ||||||||||| | |||| ||||| || | ||| Sbjct 22937 GTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCATCCTCCAACTG 22996 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || ||||| || ||||| || || || || || ||||| || Sbjct 22997 CTTGCCGGCGAAGATCAGACGCTGTTGATCAGGAGGGATACCCTCCTTATCCTGAATCTT 23056 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || |||| || ||||| || || || | || | ||||| ||||| Sbjct 23057 GGCCTTCACCGTCTCGATCGTGTCGCCTGAGTCGACATCCAATGTGATGGTCTTCCCTGT 23116 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 23117 CAGCGTCTTGACGAAGATCTGCAT 23140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109472118439589