Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq334 114 8e-21 seq179 111 1e-19 seq634 93.3 3e-14 >seq334 Length=1041161 Score = 114 bits (126), Expect = 8e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| || | || | || |||||||| || || ||||| Sbjct 527540 TCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAAG 527481 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| |||| | || |||||||| ||||||| ||||| | Sbjct 527480 ATCAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGAATCTTCGCCTTGACAGTC 527421 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||||| | || ||||| | || ||||| || || ||||| |||||||| Sbjct 527420 TCGATGGTGTCACCAGAATCGACATCCAGAGTGATGGTCTTCCCAGTGAGCGTCTTCACG 527361 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 527360 AAGATCTGCAT 527350 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| | ||| | || |||| || |||||||| |||||||| Sbjct 527079 TTCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGCCCATCCTCGAGCTGTTTGCCGGCAAA 527020 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || ||||| |||||||| |||| | ||||||||||| || ||| ||||| | Sbjct 527019 GATGAGTCGCTGCTGGTCCGGCGGGATACCCTCCTTGTCCTGGATTTTCGCCTTGACAGT 526960 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | ||||| | || || || | || || || || ||||| || ||||| || Sbjct 526959 CTCGATGGTGTCACCAGAGTCGACGTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTGAC 526900 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 526899 GAAGATCTGCAT 526888 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 || ||| | ||||| || ||| ||||||||||| ||||| | || | || |||| Sbjct 526869 CAGAACGAGGTGAAGCGTCGATTCCTTCTGAATGTTGTAGTCGGCGAGTGTGCGGCCATC 526810 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| || || ||||| || || || |||||||| |||| | ||||||||||| Sbjct 526809 CTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGCGGGATACCCTCCTTGTC 526750 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| ||||| | | |||| || |||| || || |||| || ||||| Sbjct 526749 CTGGATCTTCGCCTTGACCGTCTCGATCGTGTCGCCGGAGTCGACGTCGAGCGTGATGGT 526690 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || | |||||||| ||||||||||| Sbjct 526689 CTTCCCGGTCAAGGTCTTCACGAAGATCTGCAT 526657 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| | ||| | ||| |||| || ||||| ||||| || || Sbjct 527309 TCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGTCCATCCTCGAGCTGCTTTCCAGCGAAG 527250 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || || ||||| |||| | ||||||||||| || ||| ||||| | Sbjct 527249 ATCAGACGCTGTTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATTTTCGCCTTGACAGTC 527190 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| ||||| | || || || | || || || || ||||| || |||||||| Sbjct 527189 TCGATCGTATCACCAGAGTCGACGTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTCACG 527130 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 527129 AAGATCTGCAT 527119 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| | || | || | || || ||||| || ||||| || Sbjct 526616 TCCTTCTGGATATTGTAGTCGGCTAGCGTCCGCCCGTCCTCAAGCTGCTTGCCGGCGAAG 526557 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||| || |||| Sbjct 526556 ATCAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACGGTC 526497 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| |||||| || || |||| || ||||| || ||||| || |||||||| Sbjct 526496 TCGATCGTGTCACCGCTGTCGACGTCGAGCGTAATGGTCTTGCCCGTCAGGGTCTTCACG 526437 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 526436 AAGATCTGCAT 526426 >seq179 Length=351413 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || |||| |||||||| ||||||||||| Sbjct 23412 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAA 23471 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || || || || | || | ||||||||||| |||||| |||||| | Sbjct 23472 ATCAGACGCTGTTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCTTTGACCGTC 23531 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || || | || ||||| | || ||||| || ||||| || ||||| || Sbjct 23532 TCGATCGTGTCGCCTGAGTCGACATCCAATGTGATGGTCTTGCCCGTAAGCGTCTTGACG 23591 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 23592 AAGATCTGCAT 23602 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||||| || | || | || |||||||| || |||||||| Sbjct 23643 TCCTTCTGAATGTTGTAGTCCGCCAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCAAAG 23702 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | |||||||| || ||||| || || | Sbjct 23703 ATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTC 23762 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || ||| || ||||| | || || || || ||||| || |||||||| Sbjct 23763 TCGATCGTGTCGCCGCTGTCCACATCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTCACG 23822 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 23823 AAGATCTGCAT 23833 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || |||| |||||||| || ||||| || Sbjct 22719 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAG 22778 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || || ||||| | || | ||||||||||| |||||| || || | | Sbjct 22779 ATCAGACGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTCACAGTT 22838 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| ||||| | || || || | || ||||| || || || || ||||| || Sbjct 22839 TCGATCGTGTCACCCGAGTCGACGTCAAGCGTAATGGTCTTCCCTGTCAGCGTCTTGACG 22898 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 22899 AAGATCTGCAT 22909 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || |||| |||||||| || ||||| || Sbjct 23181 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAG 23240 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||| ||||| |||||| || || | | Sbjct 23241 ATCAGACGCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTGAATCTTGGCCTTCACCGTT 23300 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||||| | || || || | || ||||| ||||| || || ||||| || Sbjct 23301 TCGATTGTGTCACCCGAGTCGACGTCAAGCGTAATGGTCTTTCCTGTCAGCGTCTTGACG 23360 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 23361 AAGATCTGCAT 23371 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || |||| |||||||| || ||||| || Sbjct 22488 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAG 22547 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | |||||||| || ||||| || || | Sbjct 22548 ATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTC 22607 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || ||| || || || | || || || || ||||| || ||||| || Sbjct 22608 TCGATCGTATCGCCGCTGTCCACGTCCAGTGTAATCGTCTTGCCCGTCAGCGTCTTGACG 22667 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 22668 AAGATCTGCAT 22678 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||| ||||| || || | | | |||| |||| ||| Sbjct 22932 ACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCATCCTCC 22991 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || ||||| || || || || || || || | || | |||||||| || | Sbjct 22992 AACTGCTTGCCGGCGAAGATCAGACGCTGTTGATCAGGAGGGATACCCTCCTTATCCTGA 23051 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || || | | |||| || || | || ||||| | || ||||| || Sbjct 23052 ATCTTGGCCTTCACCGTCTCGATCGTGTCGCCTGAGTCGACATCCAATGTGATGGTCTTC 23111 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||| || ||||||||||| Sbjct 23112 CCTGTCAGCGTCTTGACGAAGATCTGCAT 23140 >seq634 Length=872753 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | || | || |||| || ||||| || || || || Sbjct 526691 TCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCATCCTCGAGCTGCTTGCCAGCGAAG 526750 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || || ||||| | || | ||||||||||| ||||| ||||||| Sbjct 526751 ATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACGGTC 526810 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || || | || ||||||| || || || || ||||| || |||||||| Sbjct 526811 TCGATCGTGTCGCCCGAGTCGACATCGAGCGTGATCGTCTTACCCGTCAGGGTCTTCACG 526870 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 526871 AAGATCTGCAT 526881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324630961033176