Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq112 87.8 1e-12 >seq112 Length=1369157 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 30160 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30219 |||| || |||||||||||||||||||| ||||||||||| |||||||| ||| Sbjct 972635 TACTTCGCACCGAAATGCCTCCACTGGAAACCGTACACCGGCCCCAGGTCACCCGGACGA 972694 Query 30220 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30279 | | | ||| || | |||||| || || | || || ||| | ||||| ||| Sbjct 972695 CGATCGTGGAACCCAAGCCTGTCCAGGAATTCACGCGACCCATTGCCATCCCAAATCCGG 972754 Query 30280 ACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 30339 | || || || |||| | | | || |||| | || |||| |||||| || || ||| Sbjct 972755 ATGCCTTTGGCGCTGAGCACCTCGCCGTCTGTGCAACCGCTGATGAACCAAAGGAGTTCC 972814 Query 30340 TCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTT 30395 || | ||| | ||| || |||| ||||| || || | || ||||| || || Sbjct 972815 TCGGCAACGCCGCGCCAGAACACCCGTTTGGTTGTCAGCAACGGGAACTGCCCATT 972870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408614278321991