Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq334 105 5e-18 seq179 95.1 1e-14 >seq334 Length=1041161 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || ||||| ||||| | || | | | || |||| ||| Sbjct 945218 TGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGC 945159 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| |||| ||||||||| || ||||||||||| || || || || || || Sbjct 945158 TTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTG 945099 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || || | ||||| |||| |||| || || |||| ||| |||||||| Sbjct 945098 GCCTTGACGGCCTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTGCCGGTA 945039 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || ||||| ||||| Sbjct 945038 AGCGTCTTGACGAATATTTGCAT 945016 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || ||||| || || ||||| ||||| | || | |||| || | ||| Sbjct 527321 TGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGTCCATCCTCGAGCTGC 527262 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || |||| ||||||||| |||||||| ||||| || || || || ||||| Sbjct 527261 TTTCCAGCGAAGATCAGACGCTGTTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATTTTC 527202 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | || ||| | || || || || |||| ||| ||||| || Sbjct 527201 GCCTTGACAGTCTCGATCGTATCACCAGAGTCGACGTCCAGCGTGATCGTCTTGCCCGTC 527142 Query 101447 AAAGTTTTTACAAATATCTGCATGGT 101472 | || || || || ||||||||||| Sbjct 527141 AGGGTCTTCACGAAGATCTGCATGGT 527116 >seq179 Length=351413 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || || || || || || ||||||||||| | |||| | |||| ||| Sbjct 22932 ACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCATCCTCC 22991 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||||| || || || |||| |||||||||||| || || || || || ||||| ||| Sbjct 22992 AACTGCTTGCCGGCGAAGATCAGACGCTGTTGATCAGGAGGGATACCCTCCTTATCCTGA 23051 Query 101381 ATTTT 101385 || || Sbjct 23052 ATCTT 23056 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || || || || || || ||||| ||||||| || | |||| |||| || Sbjct 23399 ATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTG 23458 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| |||| |||||||||||| || || ||||| || || || ||||| || Sbjct 23459 CTTTCCGGCAAAAATCAGACGCTGTTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTT 23518 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| || | || | ||||| | || || || | |||| || ||||| || Sbjct 23519 GGCTTTGACCGTCTCGATCGTGTCGCCTGAGTCGACATCCAATGTGATGGTCTTGCCCGT 23578 Query 101446 TAAAGTTTTTACAAATATCTGCATGGT 101472 | || || || || |||||||| || Sbjct 23579 AAGCGTCTTGACGAAGATCTGCATCGT 23605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396275178628119