Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq67 269 5e-67 >seq67 Length=308067 Score = 269 bits (298), Expect = 5e-67 Identities = 702/1052 (67%), Gaps = 34/1052 (3%) Strand=Plus/Minus Query 212711 CTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTC 212770 |||||| ||||| | | | | || ||||||||||| || | |||| || ||| Sbjct 209138 CTGGTCAATGAAGGCGCCGCGATCGGCGGCCATGTCAATCAGCGACTTCTGCTTGATCTC 209079 Query 212771 CCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGA 212830 ||| ||||||||| | | || ||||| |||| |||| | | |||||||| || || Sbjct 209078 CCAAACGGTCTTGTACAGGTCCTTGAGATCCTGCGGGATTCGGTCAATGTTCTGGACCGA 209019 Query 212831 CCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAG 212890 ||| ||||| ||||||| |||||| ||| |||| ||| ||||||| | | ||| Sbjct 209018 CCCGTTGTGTGCCATCAGCTGGTGGCGCAAGTCGTCGTCCCACAGGCCCCGGTTGATCAG 208959 Query 212891 GCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTA 212950 | | | |||||| ||||| | ||| ||||| | ||||| | ||| ||| Sbjct 208958 GTCCACCAGCAGGTGCTTGTTGATGACGGTGAACTCACCAGCCAGCACACGTCTCGCGTA 208899 Query 212951 AAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTG-- 213008 | ||| ||||| ||||||| || ||||||||||||||| ||||| || | | || Sbjct 208898 GATGTTGCTCGTGTACGGCTCGAAGCACTCGTTGTTCCCCAGGATCTG-GCTG-GTTGAC 208841 Query 213009 GCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGC 213068 ||||||||||| || || | ||| | |||| || || ||| | |||| | | Sbjct 208840 GCTGTGGGCATCGGCGCGAGCAGCAACGAATTCCGCATGCCATGCCGGGCGATATCGGCC 208781 Query 213069 CGAAGCTCTGCCCAGTCCCATCTGCCA-GACAGGTCCTCGTCCTTCACGTTCCACATGTC 213127 ||| | |||||||||||| || | ||| | ||| || ||||||||||| Sbjct 208780 TTCAGCGCGTCCCAGTCCCATC-GCGACGACGG---------CTTTACATTCCACATGTC 208731 Query 213128 AAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTC 213187 ||||| | ||||| | | | | |||||||| || | || ||||||||| | || Sbjct 208730 GAACTGGAGAATGCCCTGGGACGCCGGGCTGCCAGGGAACGACTCGTAGGGGCCGTCCTT 208671 Query 213188 CTTGGCCAGCTCGCAGGACGC-CTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCC 213246 |||||| || ||| || |||| ||| || ||||||| || || || || || | Sbjct 208670 AACGGCCAGATCCTTGGAGGCAGTGCA-GGCCGCAAAGTAGATCGTCTCGAAGATGTCGC 208612 Query 213247 TGTTGAGCTTCTTG-GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCA 213305 ||| || | | | ||||| || || ||| || | ||| | ||| | || Sbjct 208611 GGTTCAG-TGCGCGCGCCTCCGGCGAGTCGAACGGGTACCGCATCTGGATGAAGGCGTCC 208553 Query 213306 GCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCAC-TC 213364 || || |||||||| ||||| |||| ||| ||||||| || ||| || | || || | || Sbjct 208552 GCAAGGCCCTGGACGCCGATTCCGACGGGCCTGTGTCGCATGTTCGA-TCGGCGCGCTTC 208494 Query 213365 CTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGT 213424 || |||||| |||||| |||||| | |||||| ||||| | || | | || Sbjct 208493 GGGCACAGGGTAATAGTTGCCGTCGATCACCTTGTTCAGGTTCAGCGTTACAGTGTACGT 208434 Query 213425 GACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAG 213484 || | | ||| | | | | || |||| | |||| || |||| | ||| Sbjct 208433 CACGTCGTACAGCTTATGGAAGTCGA--ACGTGG----CGTCAGTGACGAACTTGGACAG 208380 Query 213485 GGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTC 213544 ||||| ||||||||||| |||||| ||| | | |||||||| | ||| || Sbjct 208379 TGCGATCGACGCCAGGTTGCAGACGGCCGTCTCGTCCGCCGACGTGTACTCGACGATTTC 208320 Query 213545 GGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGC 213604 ||||||||||| |||| ||| || |||||||||| ||||| ||||| |||| Sbjct 208319 CGTGCACAGGTTACTGCTCTTGATCGTCCCCAGGTTCTTCTGGTTCGACTTGCTGTTGCA 208260 Query 213605 AGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT 213664 || |||||||| | ||||||||| | ||| || || | ||||| | |||| ||| | Sbjct 208259 AGCGTCCTTGTACATCATGTAGGGCGTCCCCGTTTCGACCTGGGCCTCCAGGATCGCGAA 208200 Query 213665 CCAGAGGTACCTG-GCCTTGACCACCCGCCTGACAGCTCCGGGCGTAG-CCTCGTACTGT 213722 ||| |||| |||| ||| ||| || || || |||| | | | ||| || || Sbjct 208199 CCACAGGT-CCTGCGCCCTGA----TCGTCTTACGTTGCCGGCCCTCGTTCTCATAGCGT 208145 Query 213723 TCGTAGAGCTCGTTGAATTCGTGGCCCCAGAC 213754 ||| | ||| | ||| |||| ||||||||| Sbjct 208144 TCGAACAGCGCAGCGAACTCGTCGCCCCAGAC 208113 Score = 127 bits (140), Expect = 4e-24 Identities = 341/515 (66%), Gaps = 11/515 (2%) Strand=Plus/Minus Query 213896 CAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCC 213955 ||| || || || || |||||||||||||||||||| |||| ||| | ||| || ||||| Sbjct 207916 CAGCTCCAGGAACTCGAAGATGTCCGCGTGCCACGGTTCCAGGTACACGGCGAACGCGCC 207857 Query 213956 C---GGCCTCTTGCCGCCCTGGTCCAC-CAGCCTGGCCACCAT-GTTGAAGATGCGCAGG 214010 | | || |||||||||||| || ||| || || | | ||| | ||| || Sbjct 207856 CTTGCGTTTCCCGCCGCCCTGGTCGACGTAGC--GGGCAGTGTCGGAGAACACGCGAAGC 207799 Query 214011 ACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTC 214070 | ||| || | ||||| ||| ||||| || || || || ||||||| ||| | | Sbjct 207798 ATGGGGACGATGCCGTTCGACGTGCCGTTCGTACCACGAATGTAGGAGCCGGTGGCGCGC 207739 Query 214071 AGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTC 214130 | |||| || | || || ||||| ||||| |||||||||| |||||||| | | Sbjct 207738 ACGTTGTGCACGTGGACGCCAATGCCGCCGGCCGACTTGGAGATGATGGCGCATTCGCGC 207679 Query 214131 ACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAG 214190 | || || |||||| | ||| ||| | |||| || || ||||||| ||| Sbjct 207678 AGCGTGTCGTAGATGCCCTCGATGGAGTCGTTCTTGAGCGCCACCAGGAAGCAGGACGAC 207619 Query 214191 AGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTG 214250 | || || || || ||| | |||||| | || ||| || || | | |||| Sbjct 207618 ATTTGCGGGACGGGCGTGCCGGCGTTGAACATGGTCGGGGACGCGTGCGTGAACCACTTC 207559 Query 214251 TTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGA 214310 | || | ||| |||| || | | | | | | ||| || ||||||||| | Sbjct 207558 TCGGACATGAGGTTGTACGTTTGGATGGCCGCCGCGATATCCGACTTGTGGATGCCGACG 207499 Query 214311 GCGCACCTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTT--TGGGGCCCTTGAGCA 214368 ||| | ||||||||||||||| || | ||| | | ||| | | |||| |||| Sbjct 207498 GCGACGCGCATCAGCATGTGCTGTGGGCGCTC--GGCGATCTTGCCGTCGACCTTCAGCA 207441 Query 214369 GGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403 |||| || || ||||| |||||||| || || ||| Sbjct 207440 GGTACGACCGTTCCAGGGTCTTGAAGCCGAAATAG 207406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931525033345280