Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq67 132 9e-26 >seq67 Length=308067 Score = 132 bits (146), Expect = 9e-26 Identities = 260/377 (69%), Gaps = 22/377 (6%) Strand=Plus/Minus Query 221504 AAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCG 221563 ||| |||| || || ||||| || ||||| |||| ||||||||||| | |||| | | || Sbjct 208561 AAGGCGTCCGCAAGGCCCTGGACGCCGATTCCGACGGGCCTGTGTCGCATGTTCG-ATCG 208503 Query 221564 GC-CGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGAT 221622 || |||||| ||||| || ||| ||||| ||||||||| ||||| |||||||| || | Sbjct 208502 GCGCGCTTCGGGCACAGGGTAATAGTTGCCGTCGATCACCTTGTTCAGGTTCAGCGTTA- 208444 Query 221623 GACTTTA-ACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGA 221681 | | || ||| ||| |||||| || ||| | ||| | || | ||| Sbjct 208443 CAGTGTACGTCACGTCGTACAGCTT------ATGGAAGTCGAACGTGGCGTC--AGTGAC 208392 Query 221682 GGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCT 221741 | || || | ||| | | || |||||||| || |||||| ||||||| Sbjct 208391 GAACTTGGAC-AGTGCGAT-----CGAC----GCCAGGTTGCAGACGGCCGTCTCGTCCG 208342 Query 221742 TGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGAT 221801 || |||| | ||| || || || ||||| |||| |||||| |||||||||| | Sbjct 208341 CCGACGTGTACTCGACGATTTCCGTGCACAGGTTACTGCTCTTGATCGTCCCCAGGTTCT 208282 Query 221802 TGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCA 221861 | || || ||||||| ||| |||||||||||| | ||| |||| || || || | Sbjct 208281 TCTGGTTCGACTTGCTGTTGCAAGCGTCCTTGTACATCATGTAGGGCGTCCCCGTTTCGA 208222 Query 221862 GCTGAGCCACCAGAATC 221878 ||| ||| |||| ||| Sbjct 208221 CCTGGGCCTCCAGGATC 208205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928837055756480