Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq67 105 8e-18 >seq67 Length=308067 Score = 105 bits (116), Expect = 8e-18 Identities = 292/443 (66%), Gaps = 5/443 (1%) Strand=Plus/Plus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||||||| ||||| | ||||| ||||| ||||||||||| | || || | | | Sbjct 207472 CCCACAGCACATGCTGATGCGCGTCGCCGTCGGCATCCACAAGTCGGATATCGCGGCGGC 207531 Query 75271 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 75329 | | | || ||| || |||||| | | || ||||| ||||| | || ||| | | Sbjct 207532 CATCCAAACGTACAACCTCATGTCCGAGAAGT-GGTTCACGCACGCGTCCCCGACCATGT 207590 Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 |||| || || || || ||||| ||||| |||||||| | || |||| | | Sbjct 207591 TCAACGCCGGCACGCCCGTCCCGCAAATGTCGTCCTGCTTCCTGGTGGCGCTCAAGAACG 207650 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449 |||| ||| | || ||||| | || || || || || ||||| |||| ||| | Sbjct 207651 ACTCCATCGAGGGCATCTACGACACGCTGCGCGAATGCGCCATCATCTCCAAGTCGGCCG 207710 Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 75509 | || ||||| | ||| | || | ||| | |||| || ||||| || || | Sbjct 207711 GCGGCATTGGCGTCCACGTGCACAACGTGCGCGCCACCGGCTCCTACATTCGTGGTACGA 207770 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | || || | || || | || ||||||||||| || || ||| || ||||| | Sbjct 207771 ACGGCACGTCGAACGGCATCGTCCCCATGCTTCGCGTGTTCTCCGACACTGCCCGCTACG 207830 Query 75570 TAAATCA-AGCG--GGGCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATG 75626 | | || ||| ||| |||||||| | |||| || ||| ||||||| ||||| | Sbjct 207831 TCGACCAGGGCGGCGGGAAACGCAAGGGCGCGTTCGCCGTGTACCTGGAACCGTGGCACG 207890 Query 75627 CCGATATCATGGAGTTCCTTGAG 75649 | || ||| | |||||||| ||| Sbjct 207891 CGGACATCTTCGAGTTCCTGGAG 207913 Score = 102 bits (112), Expect = 1e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || || || || || || ||| | |||||||| ||||| |||| ||| ||||| ||| Sbjct 208224 GAAACGGGGACGCCCTACATGATGTACAAGGACGCTTGCAACAGCAAGTCGAACCAGAAG 208283 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 || |||| || ||||||||| || || ||||||||||| | |||||||| | Sbjct 208284 AACCTGGGGACGATCAAGAGCAGTAACCTGTGCACGGAAATCGTCGAGTACACGTCGGCG 208343 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGA 76080 || |||||||| || ||||| |||| || ||||| || | |||| |||| ||| Sbjct 208344 GACGAGACGGCCGTCTGCAACCTGGCGTCGATCGCACTGTCCAAGTTCGTCACTGA 208399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596564626100960