Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq334 129 1e-24 seq179 107 4e-18 >seq334 Length=1041161 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || | ||||||||| || |||||||| || || || || | || | | || Sbjct 527334 ACGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGTCC 527275 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || |||||||| ||||| || | ||||| || || || || || ||||| Sbjct 527274 ATCCTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGGTCGGGCGGGATGCCCTCCTT 527215 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || || || || || ||| | || ||||||||| || || || |||| || || Sbjct 527214 GTCCTGGATTTTCGCCTTGACAGTCTCGATCGTATCACCAGAGTCGACGTCCAGCGTGAT 527155 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| |||| ||||| || || |||||||| Sbjct 527154 CGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 527119 Score = 113 bits (124), Expect = 9e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | ||| || || ||||||||||| || || || || | || | | || Sbjct 527102 CGCAGGACGAGGTGAAGCGTCGATTCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGCCCA 527043 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || ||||| || |||||||| |||| || || || || || || || ||||| Sbjct 527042 TCCTCGAGCTGTTTGCCGGCAAAGATGAGTCGCTGCTGGTCCGGCGGGATACCCTCCTTG 526983 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || || || || || ||| | || || || ||| || || || |||| || ||| Sbjct 526982 TCCTGGATTTTCGCCTTGACAGTCTCGATGGTGTCACCAGAGTCGACGTCCAGCGTGATC 526923 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| || || |||||||| Sbjct 526922 GTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 526888 Score = 96.9 bits (106), Expect = 7e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||||||| | ||| || || ||||| ||||| || || || || | || | | || Sbjct 526872 ACGCAGAACGAGGTGAAGCGTCGATTCCTTCTGAATGTTGTAGTCGGCGAGTGTGCGGCC 526813 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || || ||||||||||| || | || || || || || || || ||||| Sbjct 526812 ATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGCGGGATACCCTCCTT 526753 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| || || || | || ||||| || | || || || | || || Sbjct 526752 GTCCTGGATCTTCGCCTTGACCGTCTCGATCGTGTCGCCGGAGTCGACGTCGAGCGTGAT 526693 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| ||||| || || |||||||| Sbjct 526692 GGTCTTCCCGGTCAAGGTCTTCACGAAGATCTGCAT 526657 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | |||||| || || || ||||| || || || || | || | | ||| Sbjct 945230 CGAAGGACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCG 945171 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | ||||| || || || || || ||||| Sbjct 945170 TCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTG 945111 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || || || ||||| || | | || || | || ||| Sbjct 945110 TCCTGGATCTTGGCCTTGACGGCCTCGATCGTGTCCGACGACGCCACATCGAGTGTGATC 945051 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | |||||| || ||||| ||||| Sbjct 945050 GTCTTGCCGGTAAGCGTCTTGACGAATATTTGCAT 945016 >seq179 Length=351413 Score = 107 bits (118), Expect = 4e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 82577 TCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATA 82636 ||| | ||| || | || |||||| || | ||||| || || || ||||| || || || Sbjct 22445 TCAGCGACCACCACGCAGACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTA 22504 Query 82637 ATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATC 82696 || | || | | ||| || || || || || || || ||||| || | || || || Sbjct 22505 GTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 22564 Query 82697 TGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG 82756 || || || || |||||||| || ||||| || || || | || |||||||| Sbjct 22565 CGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTATCGCCGCT 22624 Query 82757 TTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || |||| || ||||||||||| |||| |||||| || || |||||||| Sbjct 22625 GTCCACGTCCAGTGTAATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 22678 Score = 102 bits (112), Expect = 2e-16 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || |||||| || | ||||| || || || ||||| || || || || | Sbjct 23605 TACCGCCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCG 23664 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| || || || || || |||||||| || | || || || || | Sbjct 23665 CCAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCG 23724 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || |||||||| || ||||| || || || | || ||||| || || | Sbjct 23725 GGATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTGTCGCCGCTGTCCA 23784 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || ||||||||||| |||| ||||| || || |||||||| Sbjct 23785 CATCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 23833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981818809366113