Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq179 111 1e-19 seq334 98.7 7e-16 >seq179 Length=351413 Score = 111 bits (122), Expect = 1e-19 Identities = 170/240 (71%), Gaps = 7/240 (3%) Strand=Plus/Plus Query 33516 ATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTA 33575 ||||| |||||| | || ||| | || | ||| || || ||| || || |||||||| Sbjct 23370 ATCGT-ACCACCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTA 23428 Query 33576 ATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 |||| ||| ||||| | || |||| || |||||||||||||||| |||||| ||||| Sbjct 23429 GTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAAATCAGACGCTGTTGATC 23488 Query 33636 TTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG---GTGTCGCT 33692 | || | || || ||||| ||| || ||| | | ||| || ||||||| Sbjct 23489 AGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCTTTGACC---GTCTCGATCGTGTCGCC 23545 Query 33693 TGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 ||| || || || | ||||| || || || || | ||| || || ||||||||||| || Sbjct 23546 TGAGTCGACATCCAATGTGATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCATCGT 23605 Score = 102 bits (112), Expect = 5e-17 Identities = 168/240 (70%), Gaps = 7/240 (3%) Strand=Plus/Plus Query 33516 ATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTA 33575 ||||| |||||| | || ||| | ||||| || || || ||| || || |||||||| Sbjct 22908 ATCGT-ACCACCACGCAGACGCAGGACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTA 22966 Query 33576 ATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 ||||| | || || | || ||||| || || ||||| || |||| |||||| ||||| Sbjct 22967 ATCGGCCAAGGTTCGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGTTGATC 23026 Query 33636 TTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG---GTGTCGCT 33692 | || | ||| || || || ||| || |||| | ||| || ||||||| Sbjct 23027 AGGAGGGATACCCTCCTTATCCTGAATCTTGGCCTTCACC---GTCTCGATCGTGTCGCC 23083 Query 33693 TGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 ||| || || || | ||||| || || ||||| | ||| || || ||||||||||| || Sbjct 23084 TGAGTCGACATCCAATGTGATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCATCGT 23143 Score = 100 bits (110), Expect = 2e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| ||| ||||| | || |||| || || ||||| || Sbjct 23180 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAA 23239 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||| ||||||||| || | || | ||| |||||||| ||| || |||| | | Sbjct 23240 GATCAGACGCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTGAATCTTGGCCTTCACCGT 23299 Query 33678 AGTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 | ||||| | || || ||||||| ||| || || || ||||| | ||| || || Sbjct 23300 TTCGATTGTGTCACCCGAGTCGACGTCAAGCGTAATGGTCTTTCCTGTCAGCGTCTTGAC 23359 Query 33738 AAAGATCTGCATAGT 33752 ||||||||||| || Sbjct 23360 GAAGATCTGCATCGT 23374 Score = 95.1 bits (104), Expect = 8e-15 Identities = 166/238 (70%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 33516 ATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTA 33575 ||||| |||||| | || ||| | || | ||| | || ||| || || |||||||| Sbjct 22677 ATCGT-ACCACCACGCAGACGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTA 22735 Query 33576 ATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 |||| ||| ||||| | || |||| || || ||||| || |||| |||||| || || Sbjct 22736 GTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTC 22795 Query 33636 TTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTG 33694 | || | ||| || ||||| ||| || |||| || || | ||||| | | Sbjct 22796 CGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTCA-CAGTTTCGATCGTGTCACCCG 22854 Query 33695 ATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 | || ||||||| ||| || || || ||||| | ||| || || ||||||||||| || Sbjct 22855 AGTCGACGTCAAGCGTAATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCATCGT 22912 >seq334 Length=1041161 Score = 98.7 bits (108), Expect = 7e-16 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| || | ||| ||||| |||| |||| || Sbjct 527552 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCCTCCAGCTGC 527493 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || ||||| |||| ||||||||| ||| |||| | ||||| ||||| ||| ||| Sbjct 527492 TTCCCCGCAAAGATCAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGAATCTTC 527433 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || | || || | |||||| | || || || || | ||||| || || || || Sbjct 527432 GCCTTGA-CAGTCTCGATGGTGTCACCAGAATCGACATCCAGAGTGATGGTCTTCCCAGT 527374 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTT 33753 | ||| || || ||||||||||| ||| Sbjct 527373 GAGCGTCTTCACGAAGATCTGCATCGTT 527346 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || |||||||| |||| ||||||||| | || || | || || || ||||| Sbjct 526847 TCCTTCTGAATGTTGTAGTCGGCGAGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAG 526788 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| ||||||||| || |||| | ||| || ||||| || ||| || | | Sbjct 526787 ATCAGACGCTGCTGGTCCGGCGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACC--- 526731 Query 33679 GTCACG---GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTT 33735 ||| || ||||||| || || ||||| | |||||| || || || || || || || Sbjct 526730 GTCTCGATCGTGTCGCCGGAGTCGACGTCGAGCGTGATGGTCTTCCCGGTCAAGGTCTTC 526671 Query 33736 ACAAAGATCTGCATAGTT 33753 || ||||||||||| ||| Sbjct 526670 ACGAAGATCTGCATCGTT 526653 Score = 95.1 bits (104), Expect = 8e-15 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 ||||| || |||||||| |||| || ||||| | || || | ||||| |||||||| Sbjct 527078 TCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGCCCATCCTCGAGCTGTTTGCCGGCAAAG 527019 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | |||||||| || |||| | ||| || ||||| |||||| || | || Sbjct 527018 ATGAGTCGCTGCTGGTCCGGCGGGATACCCTCCTTGTCCTGGATTTTCGCCTTGA-CAGT 526960 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | |||||| | || || ||||| | ||||||||| || || || | || || || Sbjct 526959 CTCGATGGTGTCACCAGAGTCGACGTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTGAC 526900 Query 33738 AAAGATCTGCATAGTT 33753 ||||||||||| ||| Sbjct 526899 GAAGATCTGCATCGTT 526884 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | ||||| || ||||| |||||| || |||||||| |||| || |||||| | Sbjct 527334 ACGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGTCC 527275 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || || | || ||||| || || |||| |||||| || || |||| | || || || Sbjct 527274 ATCCTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGGTCGGGCGGGATGCCCTCCTT 527215 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTCACG---GTGTCGCTTGATTCCACGTCAACCGT 33710 ||| |||||| || | |||| || || || | || || ||||| | ||| Sbjct 527214 GTCCTGGATTTTCGCCTTGAC---AGTCTCGATCGTATCACCAGAGTCGACGTCCAGCGT 527158 Query 33711 GATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 |||||| || || || | || || || ||||||||||| || Sbjct 527157 GATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGGT 527116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328701327944640