Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq179 114 3e-20 seq334 96.9 8e-15 >seq179 Length=351413 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||||| |||||||| || || || | || || || |||| Sbjct 23368 CAGATCTTCGTCAAGACGCTGACAGGAAAGACCATTACGCTTGACGTCGACTCGGGTGAC 23309 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| ||||| | || ||| |||||||| || ||||| || ||| |||||| || Sbjct 23308 ACAATCGAAACGGTGAAGGCCAAGATTCAGGACAAAGAGGGTATTCCCCCGGACCAGCAG 23249 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| ||||| | || | ||||| |||||| || Sbjct 23248 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTCGCCGACTACAACATC 23189 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| || | || || ||| || |||| || Sbjct 23188 CAGAAGGAGTCGACGTTGCATCTCGTTCTGCGACTGCG 23151 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||||| ||||| || || ||||| ||||| || || ||| Sbjct 23137 CAGATCTTCGTCAAGACGCTGACAGGGAAGACCATCACATTGGATGTCGACTCAGGCGAC 23078 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| | || ||| |||||||| || || || || || || || || Sbjct 23077 ACGATCGAGACGGTGAAGGCCAAGATTCAGGATAAGGAGGGTATCCCTCCTGATCAACAG 23018 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| ||||||||||| ||||| | || ||||||||||||||| || Sbjct 23017 CGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGCCGAACCTTGGCCGATTACAACATC 22958 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| || |||||| Sbjct 22957 CAGAAGGAGTCGACACTTCAC 22937 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||||| || || || ||||| || |||| ||||| || || Sbjct 22675 CAGATCTTCGTCAAGACGCTGACGGGCAAGACGATTACACTGGACGTGGACAGCGGCGAT 22616 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| | || ||| ||||| || || || || || || ||||||| || Sbjct 22615 ACGATCGAGACGGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCGGACCAGCAG 22556 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| ||||| | || | ||||| |||||| || Sbjct 22555 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAACATC 22496 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || || || || Sbjct 22495 CAGAAGGAGTCGACACTGCATCTCGT 22470 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||||| ||||| || || || || | || || || |||| Sbjct 22906 CAGATCTTCGTCAAGACGCTGACAGGGAAGACCATTACGCTTGACGTCGACTCGGGTGAC 22847 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| | || ||| |||||||| || || || || ||| |||||| || Sbjct 22846 ACGATCGAAACTGTGAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAACAG 22787 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| ||||| | || | ||||| |||||| || Sbjct 22786 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAACATC 22727 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| || | || || ||| || | || || Sbjct 22726 CAGAAGGAGTCGACGTTGCATCTCGTTCTGCGTCTGCG 22689 >seq334 Length=1041161 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| || || | ||| || |||| | Sbjct 527134 AAGACCCTGACGGGCAAGACGATCACGCTGGACGTCGACTCTGGTGATACGATCGAGACT 527193 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || || || || || || || ||| ||| || | || |||||| Sbjct 527194 GTCAAGGCGAAAATCCAGGACAAGGAGGGCATCCCGCCCGACCAACAGCGTCTGATCTTC 527253 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||||||| | || |||||| | || | ||||| |||||| ||||||||||||| Sbjct 527254 GCTGGAAAGCAGCTCGAGGATGGACGCACGCTTGCCGACTACAACATCCAGAAAGAGTCG 527313 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| || || | ||||| Sbjct 527314 ACTCTGCACCTGGTGCTGCGTCTTCG 527339 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | || || ||||| ||||| ||||||||||||| || ||||| || | || Sbjct 527339 CGAAGACGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCAAGCGTG 527280 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||| || ||||||||||| |||||||| || || ||||| Sbjct 527279 CGTCCATCCTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGTTG 527236 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || || || | || || || || |||||| |||| | Sbjct 526441 AAGACCCTGACGGGCAAGACCATTACGCTCGACGTCGACAGCGGTGACACGATCGAGACC 526500 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| ||| ||| || | || |||||| Sbjct 526501 GTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCGCCCGACCAGCAGCGCCTGATCTTC 526560 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || |||| | ||||| ||||| ||||||| ||||| Sbjct 526561 GCCGGCAAGCAGCTTGAGGACGGGCGGACGCTAGCCGACTACAATATCCAGAAGGAGTCG 526620 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||||||| || | || || Sbjct 526621 ACGCTGCACCTTGTTCTGCGTCTCCG 526646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181810700233307