Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq67 199 4e-46 >seq67 Length=308067 Score = 199 bits (220), Expect = 4e-46 Identities = 368/532 (69%), Gaps = 11/532 (2%) Strand=Plus/Minus Query 147884 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTTCCGCC-- 147941 ||||||| |||||||| ||||| | ||| ||||| | ||| || || || || ||||| Sbjct 207899 AGATGTCCGCGTGCCACGGTTCCAGGTACACGGCGAACGCGCCCTTGCGTTTCCCGCCGC 207840 Query 147942 -CTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCG 148000 ||||||||| | ||| | ||| | |||||||| | |||||| | | |||| ||| Sbjct 207839 CCTGGTCGACGTAGCGGGCAGTGTCGGAGAACACGCGAAGCATGGGGACGATGCCGTTCG 207780 Query 148001 CAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGC 148060 |||||||| || | || | | |||| ||| ||||| | |||||||| |||| Sbjct 207779 ACGTGCCGTTCGTACCACGAATGTAGGAGCCGGTGGCGCGCACGTTGTGCACGTGGACGC 207720 Query 148061 CAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGT 148120 ||||||||||| | |||| || ||| ||||| |||| || || ||||||||| | Sbjct 207719 CAATGCCGCCGGCCGACTTGGAGATGATGGCGCATTCGCGCAGCGTGTCGTAGATGCCCT 207660 Query 148121 CGATGCTGTCGTTTTTGA-CGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTT 148179 ||||| |||||| |||| |||| | || || || || |||||||||| | |||| Sbjct 207659 CGATGGAGTCGTTCTTGAGCGCC-ACCAGGAAGCAGGACGACATTTGCGGGACGGGCGTG 207601 Query 148180 CCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATAC 148239 || || ||| | ||| || ||||||||| ||| | || | ||| | | ||| Sbjct 207600 CCGGCGTTGAACATGGTCGGGGACGCGTGCGTGAACCACTTCTCGGACATGAGGTTGTAC 207541 Query 148240 GTCTCAATAGCGTCTTCGATGTCGTCGCC--GTGAATGCCCAGCGCGACGCGCATGAGCA 148297 || | || || | |||| || || | ||| ||||| | ||||||||||| |||| Sbjct 207540 GTTTGGATGGCCGCCGCGATATC--CGACTTGTGGATGCCGACGGCGACGCGCATCAGCA 207483 Query 148298 TGTGCTGTGGTCGTTCGGC-AACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGG 148356 |||||||||| || ||||| | |||| || || ||| || || || ||| ||| Sbjct 207482 TGTGCTGTGGGCGCTCGGCGATCTTG-CCGTCGACCTTCAGCAGGTACGACCGTTCCAGG 207424 Query 148357 GTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 || ||| | || || || | | || ||||| | ||||| ||||| || Sbjct 207423 GTCTTGAAGCCGAAATAGTCAAAGTCGAAATCGCGATCGTAGATGATGGACG 207372 Score = 149 bits (164), Expect = 6e-31 Identities = 733/1153 (64%), Gaps = 28/1153 (2%) Strand=Plus/Minus Query 146680 TTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGT 146739 || |||||||| || || ||||| ||| ||| ||||| ||||| ||||||| ||| Sbjct 209152 TTGAACGATTGCGACTGGTCAATGAAGGCGCCGCGATCGGCGGCCATGTCAATCA-GCGA 209094 Query 146740 TTTGT-CTTCATTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTC 146798 || | ||| || |||||| |||| |||||||| |||| | | || || | || Sbjct 209093 CTTCTGCTTGATCTCCCAAACGGTCTTGTACAGGTCCTTGAGATCCTGCGGGATTCGGTC 209034 Query 146799 AATGTTTTGAATAGAGCCCTTGTGCGCAAAAATAGTGTTTCGTATTTCGGGCGTGTAA-A 146857 |||||| || | || || ||||| || | | || || | ||| ||| | | Sbjct 209033 AATGTTCTGGACCGACCCGTTGTGTGCCATCAGCTGGTGGCGCAAGTCGT-CGTCCCACA 208975 Query 146858 GGTTTAGTTTAATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCA 146917 || | || || ||||| | | | | || |||| || ||||| || |||| Sbjct 208974 GGCCCCGGTTGATCAGGTCCACCAGCAGGTGCTTGTTGATGACGGTGAACTCACCAGCCA 208915 Query 146918 GCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATA 146977 |||||||||| || | ||||| ||| | ||||| || |||| || || || | | Sbjct 208914 GCACACGTCTCGCGTAGATGTTGCTCGTGTACGGCTCGAAGCACTCGTTGTTCCCCAGGA 208855 Query 146978 TTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACG 147037 | ||| || | || || ||||| ||| | || ||| ||||| |||| || | | Sbjct 208854 TCTGGCTGGTTGACGCTGTGGGCATCGGCGCGAGCAGCAACGAATTCCGCATGCCATGCC 208795 Query 147038 CACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACA 147097 ||| | | |||||| | | ||||||||| |||||| ||| | || ||||||| Sbjct 208794 GGGCGATATCGGCCTTCAGCGCGTCCCAGTCCCATCGCGACGACGGCTTTACATTCCACA 208735 Query 147098 TGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGT 147157 ||||| ||||||| | || | || || ||||||| ||||| |||| |||| Sbjct 208734 TGTCGAACTGGAGAATGCCCTGGGACGCCGGGCTGCCAGGGAACGACTCGTAGGGGCCGT 208675 Query 147158 CGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTT 147217 | |||| || | || | || || |||| || || ||| ||| | Sbjct 208674 CCTTAACGGCCAGATCCTTGGAGGCAGTGCAGGCCGCAAAGTAGATCGTCTCGAAGATGT 208615 Query 147218 GTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCAT 147277 ||| || || ||| || ||| | || |||| | | ||||| | Sbjct 208614 CGCGGTTCAGTGCGCGCGCCTCCGGCGAGTCGAACGGGTACCGCATCTGGATGAAGGCGT 208555 Query 147278 CGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGC----TTTTCGTT-GCTGCGCTT 147332 | || | ||||||| |||| |||| || | || | |||| | | |||||| Sbjct 208554 CCGCAAGGCCCTGGACGCCGATTCCGACGGGCCTGTGTCGCATGTTCGATCGGCGCGCTT 208495 Query 147333 CGCGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAAC 147392 || || | || || | ||||| || || | |||||| ||||| || |||| Sbjct 208494 CGGGCACA-----GGGTAATAGTTGCCGTCGATCACCTTGTTCAGGTTCAGCGTTACAGT 208440 Query 147393 TTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGTACGCATTG 147452 | || | | || || | ||| || | || |||| ||| | || ||| Sbjct 208439 GTACGTCACGTCGTACAGCTTATGGAAGTCGAACGTGGCGTCAGTGAC--GAAC---TTG 208385 Query 147453 GTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTC-TTCGGCGTCGCTGTACTGCA 147511 | || ||||| |||||||| ||||||||||||||||| | || || || |||||| | Sbjct 208384 GA-CAGTGCGATCGACGCCAGGTTGCAGACGGCCGTCTCGTCCGCCGACG-TGTACTCGA 208327 Query 147512 CGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCC 147571 ||||||| | ||||||||| |||| || || |||| || | ||| || || | Sbjct 208326 CGATTTCCGTGCACAGGTTACTGCTCTTGATCGTCCCCAGGTTCTTCTGGTTCGACTTGC 208267 Query 147572 GATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGA 147631 ||||| ||||| ||| | | |||||| || || || ||||| || | || | || Sbjct 208266 TGTTGCAAGCGTCCTTGTACATCATGTAGGGCGTCCCCGTTTCGACCTGGGCCTCCAGGA 208207 Query 147632 T---AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGT 147688 | |||| |||||||||||| | | | || || | ||||||||||| || | Sbjct 208206 TCGCGAACC---ACAGGTCCTGCGCCCTGATCGTCTTACGTTGCCGGCCCTCGTTCTCAT 208150 Query 147689 ACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGAT 147748 | || ||| ||| | | ||||||||||| || || || || ||||| || | Sbjct 208149 AGCGTTCGAACAGCGCAGCGAACTCGTCGCCCCAGACGTCCGCCAGACCGGGCGCCTCGT 208090 Query 147749 GCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCA 147808 ||| || | || |||||| | |||| || | || || |||| |||||||| || | Sbjct 208089 TCGGGCAGAACAACGACCAGTGGGCGTCGGCCTGCACACGCTGCATGAACAGATCGGGAA 208030 Query 147809 CCCACAGCGCGTA 147821 ||| || |||| Sbjct 208029 TCCAAAGGCCGTA 208017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476607226254120