Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq112 113 5e-20 >seq112 Length=1369157 Score = 113 bits (124), Expect = 5e-20 Identities = 283/424 (67%), Gaps = 11/424 (3%) Strand=Plus/Plus Query 147153 CAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAAT 147212 ||| |||| |||||||| |||| | | | ||| | || || || | | || || Sbjct 972511 CAGATCCGATGGGTTCCATGCCGTCATGATGATCCGACGACTGTCCGGCTGGGTTTTGAT 972570 Query 147213 CTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTC 147272 | |||||||| | |||||||| | || ||||| |||||| | | || Sbjct 972571 CATCTCGATAACTTGCGCGAGCTGGTCGATTCCTTGGCCTGCGTAGTCGGCGTCACATGT 972630 Query 147273 CACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGG 147332 | ||| | || || || |||||||||||||| |||||||| ||||||||||| || || Sbjct 972631 GGCATACTTCGCACCGAAATGCCTCCACTGGAAACCGTACACCGGCCCCAGGTCACCCGG 972690 Query 147333 CTTTCTGTGCGAGAAGCCC--GCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAG 147390 | | || | | ||| ||| | | || || || | ||||| | | | ||||| Sbjct 972691 ACGAC-GATCGTGGAACCCAAGCCTG-TCCAGGAATTCACGCGACCCATTGCCATCCCAA 972748 Query 147391 ATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGC 147450 || | | || |||||| |||| ||| ||| ||| | || | ||||||||| || Sbjct 972749 ATCCGGATGCCTTTGGCGCTGAGCACCTCGCCGTCTGTGCAACCGCTGATGAACCAAAGG 972808 Query 147451 AGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTG---G 147507 || ||||| ||| || | ||| || |||| ||||| ||||||| |||||||| Sbjct 972809 AGTTCCTCGGCAACGCCGCGCCAGAACACCCGTTTGGTTGTCAGCAACGGGAACTGCCCA 972868 Query 147508 TCCCTCAG--CGAATACCTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCC 147565 | ||| || ||| ||| | ||| |||||||||| | | |||||| |||||||| Sbjct 972869 TTCCTGAGATCGA--ACCGCATCTGCGCCCCAAACACGGCGACCGTGCCAACGCCCGTCC 972926 Query 147566 TGTC 147569 ||| Sbjct 972927 GGTC 972930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583483135168800