Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq67 194 2e-43 seq13 156 6e-32 seq101 147 3e-29 seq112 95.1 2e-13 seq377 93.3 6e-13 seq1 93.3 6e-13 seq146 87.8 3e-11 >seq67 Length=308067 Score = 194 bits (214), Expect = 2e-43 Identities = 379/544 (70%), Gaps = 22/544 (4%) Strand=Plus/Plus Query 262876 CGCTGGGACTGGGACGCACTGCGGGCGTCGGT-TCGACAG-CATGGCCTGCGCAACTCGT 262933 || |||||||||||||| ||| ||| || | ||| | | |||||| |||| || |||| Sbjct 208758 CGATGGGACTGGGACGCGCTGAAGGC--CGATATCGCCCGGCATGGCATGCGGAATTCGT 208815 Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 |||| | |||| |||||||| || | || ||||||||||| |||| |||| | Sbjct 208816 TGCTGCTCGCGCCGATGCCCACAGCGTCAACCAGCCAGATCCTGGGGAACAACGAGTGCT 208875 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGG 263053 ||||| |||||||||||||||| || | || ||||| | || || || ||||| Sbjct 208876 TCGAGCCGTACACGAGCAACATCTACGCGAGACGTGTGCTGGCTGGTGAGTTCACCGTCA 208935 Query 263054 TCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGT-GGACGCCCGACTTTCGC 263112 ||||| |||||| | | | || | || ||||||| ||||| |||||| ||| Sbjct 208936 TCAACAAGCACCTGCTGGTGGACCTGATCAACCGGGGCCTGTGGGACG-ACGACTTGCGC 208994 Query 263113 GACCGGCTCATTGCGGCAC-AGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCC 263171 ||| ||| || || ||| | || ||||| ||| | ||||| ||| | |||| Sbjct 208995 CACCAGCTGATGGC-ACACAACGGGTCGGTCCAGAACATTGAC--CGA----ATCCCGCA 209047 Query 263172 CGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGG--GT-GACCATTGA 263228 |||||||||| || | ||||||||| |||||| | ||| | | || | ||||| Sbjct 209048 GGATCTCAAGGACCTGTACAAGACCGTTTGGGAGAT---CAAGCAGAAGTCGCTGATTGA 209104 Query 263229 TATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGC 263288 ||||| ||||| |||| ||| | |||||| || ||| ||||| | || | | Sbjct 209105 CATGGCCGCCGATCGCGGCGCCTTCATTGACCAGTCGCAATCGTTCAACGTCCACATGAC 209164 Query 263289 CGAC-CCGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCA 263347 |||| || | ||| | ||||||||||| ||| || ||| | ||||||| Sbjct 209165 CGACATTAACTTTGGCAAGC-TGACGTCGATGCATTTCTACGCCTGGACTAAAGGCCTCA 209223 Query 263348 AGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCG 263407 |||| ||||||||||| ||||| | |||||||| | | ||||||| | |||||||| | Sbjct 209224 AGACGGGCATGTACTACCTGCGATCTCGGCCCGCCGTCGACGCCATCAAGTTCACCGTTG 209283 Query 263408 ATCA 263411 | || Sbjct 209284 ACCA 209287 Score = 188 bits (208), Expect = 1e-41 Identities = 217/292 (74%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 |||||| || ||| |||||| ||| | || || | || || ||||||||||| Sbjct 207550 CATGTCCGAGAAGTGGTTCACGCACGCGTCCCCGACCATGTTCAACGCCGGCACGCCCGT 207609 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 |||||| | ||||| ||||| ||| ||| | ||| ||| || |||||||||||||| Sbjct 207610 CCCGCAAATGTCGTCCTGCTTCCTGGTGGCGCTCAAGAACGACTCCATCGAGGGCATCTA 207669 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 |||||||| | ||||| ||||||||||| ||||||||||||| || | || Sbjct 207670 CGACACGCTGCGCGAATGCGCCATCATCTCCAAGTCGGCCGGCGGCATTGGCGTCCACGT 207729 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 ||||| ||||||||| | ||| ||||| | || || |||||| ||| |||||| | Sbjct 207730 GCACAACGTGCGCGCCACCGGCTCCTACATTCGTGGTACGAACGGCACGTCGAACGGCAT 207789 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 || |||||||||||||| || |||||| || ||||||||||||||| || Sbjct 207790 CGTCCCCATGCTTCGCGTGTTCTCCGACACTGCCCGCTACGTCGACCAGGGC 207841 >seq13 Length=679110 Score = 156 bits (172), Expect = 6e-32 Identities = 187/250 (75%), Gaps = 12/250 (5%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||| || | | ||||||||||| || |||||||| |||||| || | | | Sbjct 495353 TCGTACGCGACGTACATCTACAAGGTCCTGAAGCAGGTCCACCCCGACACGGGT-----A 495299 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || | | | ||||||| |||||||||||||| |||||||||| |||| |||||| Sbjct 495298 TCTCGCGCCGCG-CCATGTCCATCATGAACTCGTTCATCAACGACATCTTCGAGCGCATC 495240 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAAC---AAGCGCAACACGATCGGCACGCGC 725072 | | |||||||| || || ||||||| |||| ||| || | | ||| | ||| Sbjct 495239 GCCCTGGAGGCCGGCCGTCTTGCGCGCTACAACTCCAAGTCCACCCTG-TCGTC--GCGT 495183 Query 725073 GAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCC 725132 |||||||||||| | || ||||||||| ||| ||| || || |||| ||||||||||||| Sbjct 495182 GAGATCCAGACCTCTGTCCGCCTGATCCTGCCCGGTGAGCTCGCCAAGCACGCCGTCTCC 495123 Query 725133 GAGGGCACCA 725142 || ||||||| Sbjct 495122 GAAGGCACCA 495113 >seq101 Length=450405 Score = 147 bits (162), Expect = 3e-29 Identities = 185/250 (74%), Gaps = 12/250 (5%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||| || | | ||||||||||| | |||||||| ||||| || | | | Sbjct 290731 TCGTACGCGACGTACATCTACAAGGTTTTGAAGCAGGTCCACCCTGACACGGGT-----A 290677 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || | | | ||||||| |||||||||||||| |||||||||| |||| ||||| Sbjct 290676 TCTCGCGCCGTG-CCATGTCCATCATGAACTCGTTCATCAACGACATCTTCGAGCGCATT 290618 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAAC---AAGCGCAACACGATCGGCACGCGC 725072 | |||||||| ||||| ||||||| |||| ||| | || | ||| | |||| Sbjct 290617 GCGCTTGAGGCCGGGCGCCTTGCGCGCTACAACTCCAAGT-CGACGCTGTCGTC--GCGC 290561 Query 725073 GAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCC 725132 |||||||||||| |||| || |||||| ||| ||| ||||| |||| |||||||||||| Sbjct 290560 GAGATCCAGACCTCCGTCCGTCTGATCCTGCCCGGTGAACTCGCCAAGCACGCCGTCTCG 290501 Query 725133 GAGGGCACCA 725142 || ||||||| Sbjct 290500 GAAGGCACCA 290491 >seq112 Length=1369157 Score = 95.1 bits (104), Expect = 2e-13 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 1152857 ATGATCTCCCACATGACGACGCCAAACGAGTAGACATCGGCCTTTTCCGAATACTTTTCG 1152916 |||||||||||||||| || ||| |||| ||| || |||||||| |||| ||||| ||| Sbjct 149483 ATGATCTCCCACATGATGATGCCGAACGCGTACACGTCGGCCTTCTCCGTGTACTTGTCG 149424 Query 1152917 CCGCGCAAGATCTCGGGCGCCGTCCACGCCGGCGTGCCGCAGCGGGTCATC-GTCGCATT 1152975 || ||| |||||||| | |||| ||||| ||| | |||||| || | || Sbjct 149423 CCCATGCAGACCTCGGGCGACATCCAGATTGGCGTCCCGACCTGCGTCATCTGTTTC-TT 149365 Query 1152976 GTCCTGGCGGATGCGGGCAAAGCCAAAGTCGGCCACCTTGACGGTGAAATTGTCGTCGAC 1153035 || | ||| || | | |||||||||||| ||||||||| | ||| |||||| Sbjct 149364 CTCGTCCAGGAACCGCGTCAGGCCAAAGTCGGCGACCTTGACGACCCAGTTGCGGTCGAC 149305 Query 1153036 GAGCAGGTT 1153044 || ||||| Sbjct 149304 CAGGAGGTT 149296 Score = 86.0 bits (94), Expect = 9e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 332921 GACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGG 332980 ||||| |||||||| |||||||| || ||||| | | || | ||||| ||| || Sbjct 353312 GACGTATTGCAGGCAAGGGCAAAGCGGGTCGTGTCCGAATAGATCTCCATCGTCCGACGA 353371 Query 332981 AGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGG 333040 || ||||| || || || | ||| | | ||||||||||||||| ||||| |||||||| Sbjct 353372 AGCGCCTGCTGCGCTGCGGACGTCATACTGTCGGCCTCGTCGAGAATGATAATCTTGTGC 353431 Query 333041 CG 333042 || Sbjct 353432 CG 353433 >seq377 Length=2385 Score = 93.3 bits (102), Expect = 6e-13 Identities = 151/210 (72%), Gaps = 12/210 (6%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCC-GCTACCAGCG 1455774 ||||| ||||| || ||||||||||| || ||||| ||||||||| || || | Sbjct 606 GAGCCCATGCTGATGGAGAACCCGAACCGGTTCGTCCTCTTCCCCATCGAGCATTCATCC 665 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 | | ||||| |||||| | ||| | || || || |||||||| || ||| | |||| Sbjct 666 GTT-TGGGAGATGTACAAGAAACAT-GTCGCATCGTTCTGGACCGCGGAAGAGATTGACC 723 Query 1455835 TCGGCGCCG----ACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATC 1455890 | | ||| ||| || | |||| | |||| | ||| |||||| | ||||||||| Sbjct 724 T-GTCGCAAGATCACAAGG---ATTGGGCGGCGCTTAACGATGACGAGAGACATTTCATC 779 Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAG 1455920 ||| ||||||| ||||| ||| ||||| || Sbjct 780 AAGAACGTCCTGGCCTTCTTT-GCCGCAAG 808 >seq1 Length=1479440 Score = 93.3 bits (102), Expect = 6e-13 Identities = 151/210 (72%), Gaps = 12/210 (6%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCC-GCTACCAGCG 1455774 ||||| ||||| || ||||||||||| || ||||| ||||||||| || || | Sbjct 1041025 GAGCCCATGCTGATGGAGAACCCGAACCGGTTCGTCCTCTTCCCCATCGAGCATTCATCC 1040966 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 | | ||||| |||||| | ||| | || || || |||||||| || ||| | |||| Sbjct 1040965 GTT-TGGGAGATGTACAAGAAACAT-GTCGCATCGTTCTGGACCGCGGAAGAGATTGACC 1040908 Query 1455835 TCGGCGCCG----ACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATC 1455890 | | ||| ||| || | |||| | |||| | ||| |||||| | ||||||||| Sbjct 1040907 T-GTCGCAAGATCACAAGG---ATTGGGCGGCGCTTAACGATGACGAGAGACATTTCATC 1040852 Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAG 1455920 ||| ||||||| ||||| ||| ||||| || Sbjct 1040851 AAGAACGTCCTGGCCTTCTTT-GCCGCAAG 1040823 >seq146 Length=385314 Score = 87.8 bits (96), Expect = 3e-11 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 1816049 CCGTCGCCGCCATATGCAAACTGGACAATGTCGCCGTTGGCGTTGCGCACGAGGCCGCCG 1816108 ||||| |||| || ||||||| ||||| || || || |||||| |||| || Sbjct 259530 CCGTCCTCGCCGTACAGGAACTGGATGATGTCACCCATGCTATTCCGCACGGTGCCGTCG 259589 Query 1816109 CGCTTGATCTGCAGGCTCTCCATCGACTTGATGCACCGGCGCTGGATGTAGCCACGTC-C 1816167 ||||||| | | |||||| | ||||| | || |||||||||||||| ||| | Sbjct 259590 TACTTGATCATGACGTCCTCCATGGCCTTGACGAGGCGCCGCTGGATGTAGCC-GGTCTC 259648 Query 1816168 GGCGGTCTTGACGGCCGTGTCGACCAGGCCCTCGCGGCCG 1816207 |||||||||||||||||||||||| | || || | |||| Sbjct 259649 GGCGGTCTTGACGGCCGTGTCGACGATACCTTCTCTGCCG 259688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177746866624054