Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq377 87.8 1e-12 seq1 87.8 1e-12 >seq377 Length=2385 Score = 87.8 bits (96), Expect = 1e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 44129 CGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCAT 44187 || ||||| ||||| |||| || |||||||||||||| |||||||| ||| | || Sbjct 1171 CGGCTTGTGGCGTTCGCAGCAGTCGAAGGCATTTTCTTCAGCGGATCGTTCTGC-TCGAT 1229 Query 44188 ATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAG 44247 || ||| | || || || || | |||| |||||| |||| |||||| | ||| Sbjct 1230 TTTCTGGCTGAAAAAGCGGGGGCTTATGCACGGGTTGTCGTTCAGCAATGAGCTTATATC 1289 Query 44248 TCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 ||| || ||||| | |||||||||||||| || ||| Sbjct 1290 TCGCGACGAAGGGCTGCATTGCGATTTTGCCTGTTTG 1326 >seq1 Length=1479440 Score = 87.8 bits (96), Expect = 1e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 44129 CGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCAT 44187 || ||||| ||||| |||| || |||||||||||||| |||||||| ||| | || Sbjct 1040460 CGGCTTGTGGCGTTCGCAGCAGTCGAAGGCATTTTCTTCAGCGGATCGTTCTGCT-CGAT 1040402 Query 44188 ATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAG 44247 || ||| | || || || || | |||| |||||| |||| |||||| | ||| Sbjct 1040401 TTTCTGGCTGAAAAAGCGGGGGCTTATGCACGGGTTGTCGTTCAGCAATGAGCTTATATC 1040342 Query 44248 TCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 ||| || ||||| | |||||||||||||| || ||| Sbjct 1040341 TCGCGACGAAGGGCTGCATTGCGATTTTGCCTGTTTG 1040305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397452769055335