Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq179 111 1e-19 seq634 100 2e-16 seq334 100 2e-16 >seq179 Length=351413 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| |||| || | ||| | ||| || || || ||||| |||||||| | Sbjct 23607 CCGCCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCC 23666 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | ||||| |||| || ||||| || ||||| | || |||||||| || || ||||| Sbjct 23667 AGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGG 23726 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCT-TCAAC 27199 | ||||| ||||| ||||||| |||| || || | ||||| | ||| || || Sbjct 23727 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTGTC-GCCGCTGTCCAC 23785 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||||||||| || ||||| ||||| ||||| Sbjct 23786 ATCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 23833 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| |||| || | ||| | || || || || || || ||||||||| Sbjct 22452 CCACCACGCAGACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCG 22511 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || || ||||| || |||||| | || |||||||| || |||||||| Sbjct 22512 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGG 22571 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCT-TCAAC 27199 | ||||| ||||| ||||||| |||| || || | || || | ||| || || Sbjct 22572 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTATC-GCCGCTGTCCAC 22630 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||||||||| || || || ||||| ||||| Sbjct 22631 GTCCAGTGTAATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 22678 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| |||| || | ||| ||||| || || || || || ||||||||| Sbjct 22683 CCACCACGCAGACGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCG 22742 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || || ||||| || |||||| | || ||||||||||| ||||| || Sbjct 22743 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGA 22802 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || |||||| |||| ||||| | ||||| | || || Sbjct 22803 ATACCCTCCTTGTCCTGAATCTTGGCCTTCACAGTTTCGATCGTGTCACCCGAGTCGACG 22862 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || ||||| || || || ||||| ||||| Sbjct 22863 TCAAGCGTAATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCAT 22909 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| |||| || | ||| | ||| || || || || || ||||||||| Sbjct 23376 CCACCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 23435 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || || ||||| || ||||| |||| |||||||||||||| || || Sbjct 23436 AGGGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAAATCAGACGCTGTTGATCAGGAGGG 23495 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || |||||| ||| | || || | ||||| | || || Sbjct 23496 ATGCCCTCCTTGTCCTGAATCTTGGCTTTGACCGTCTCGATCGTGTCGCCTGAGTCGACA 23555 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | |||||||| || || || || ||||| ||||| Sbjct 23556 TCCAATGTGATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 23602 >seq634 Length=872753 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27045 TGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGT 27104 || ||||| || || || || || ||||||||| | ||||| | || |||||||| Sbjct 526679 TGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCATCCTCGAGCTGC 526738 Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 || || ||| | || ||||||||||| ||||| || | |||||| || || ||||||| Sbjct 526739 TTGCCAGCGAAGATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTG 526798 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 || | ||| || | ||||| | || || || || || || | || |||||| Sbjct 526799 GCCTTGACGGTCTCGATCGTGTCGCCCGAGTCGACATCGAGCGTGATCGTCTTACCCGTC 526858 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| ||||| ||||| Sbjct 526859 AGGGTCTTCACGAAGATCTGCAT 526881 >seq334 Length=1041161 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||| || || || || |||||||||||| | | ||| |||| || ||||| || || Sbjct 526623 CGTCGACTCCTTCTGGATATTGTAGTCGGCTAGCGTCCGCCCGTCCTCAAGCTGCTTGCC 526564 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | || || ||||| || || ||||| | |||||| || || ||||||| || Sbjct 526563 GGCGAAGATCAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGGATCTTGGCCTT 526504 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || ||| || | ||||| | || || || || || || | ||||||||||| || Sbjct 526503 CACGGTCTCGATCGTGTCACCGCTGTCGACGTCGAGCGTAATGGTCTTGCCCGTCAGGGT 526444 Query 27230 TTTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 526443 CTTCACGAAGATCTGCAT 526426 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||| || ||||| || || ||||||||| | ||||| | || ||||||||||| || Sbjct 527085 CGTCGATTCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGCCCATCCTCGAGCTGTTTGCC 527026 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | ||||| ||||| || |||||||| | |||||| || || ||| || || Sbjct 527025 GGCAAAGATGAGTCGCTGCTGGTCCGGCGGGATACCCTCCTTGTCCTGGATTTTCGCCTT 526966 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | || || | ||||| | || || || || || || | ||||||||||| || Sbjct 526965 GACAGTCTCGATGGTGTCACCAGAGTCGACGTCCAGCGTGATCGTCTTGCCCGTCAGGGT 526906 Query 27230 TTTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 526905 CTTGACGAAGATCTGCAT 526888 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||| || || || || || ||||||||| || |||| |||| || ||||| ||||| Sbjct 945213 CGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGCTTACC 945154 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | || ||||||||||| |||||||| | ||||| || || ||||||| || Sbjct 945153 AGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTT 945094 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | || || | ||||| | | | || || || || || | ||||| || || || Sbjct 945093 GACGGCCTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTGCCGGTAAGCGT 945034 Query 27230 TTTCACAAAGATTTGCAT 27247 || || || |||||||| Sbjct 945033 CTTGACGAATATTTGCAT 945016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424930945681704