Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq67 111 5e-19 seq377 87.8 6e-12 seq1 87.8 6e-12 >seq67 Length=308067 Score = 111 bits (122), Expect = 5e-19 Identities = 174/244 (71%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 254843 ATCCAAGGCATCTTCGAAACGCTATCGCGA-TGCGCATTCGTGAGTCAATCGAGCGGCGG 254901 ||| | ||||||| ||| ||||| ||||| ||||| || | | ||| |||||| Sbjct 207656 ATCGAGGGCATCTACGACACGCTG-CGCGAATGCGCCATCATCTCCAAGTCGGCCGGCGG 207714 Query 254902 CGTGGGACTCAACATCTCCAACGTGCGCGCCAGCGGCACACCGATTCGCTCGACGAACGG 254961 | | || || || | |||||||||||||| |||| | ||||| |||||||| Sbjct 207715 CATTGGCGTCCACGTGCACAACGTGCGCGCCACCGGCTCCTACATTCGTGGTACGAACGG 207774 Query 254962 -ACGGAGCGGCGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCG 255020 ||| | |||||| | || ||| | || |||||| | || || |||||||||| Sbjct 207775 CACGTCG-AACGGCATCGTCCCCATGCTTCGCGTGTTCTCCGACACTGCCCGCTACGTCG 207833 Query 255021 ATCAAGGGGGCGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCG 255080 | || || ||||| |||||| || |||||| || | |||||||| ||||||||||| | Sbjct 207834 ACCAGGGCGGCGGGAAACGCAAGGGCGCGTTCGCCGTGTACCTGGAACCGTGGCACGCGG 207893 Query 255081 ACAT 255084 |||| Sbjct 207894 ACAT 207897 >seq377 Length=2385 Score = 87.8 bits (96), Expect = 6e-12 Identities = 118/163 (72%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 443709 CGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCAT 443768 || || || || || || | |||||||| | || || ||||| | | || ||| || Sbjct 1171 CGGCTTGTGGCGTTCGCAGCAGTCGAAGGCATTTTCTTCAGCGG-ATCGTTCTGCTCGAT 1229 Query 443769 CTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAG 443828 |||||| |||||||||| || ||||||||||| || | || || || || || || Sbjct 1230 TTTCTGGCTGAAAAAGCGGGGGCTTATGCACGGGTTGTCGTTCAGCAATGAGCTTATATC 1289 Query 443829 TCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871 ||| ||||| || |||||||||| || |||||| | || ||| Sbjct 1290 TCGCGACGAAGGGCTGCATTGCGATTTTGCCTGTTTGCTGTAC 1332 >seq1 Length=1479440 Score = 87.8 bits (96), Expect = 6e-12 Identities = 118/163 (72%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 443709 CGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCAT 443768 || || || || || || | |||||||| | || || ||||| | | || ||| || Sbjct 1040460 CGGCTTGTGGCGTTCGCAGCAGTCGAAGGCATTTTCTTCAGCGG-ATCGTTCTGCTCGAT 1040402 Query 443769 CTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAG 443828 |||||| |||||||||| || ||||||||||| || | || || || || || || Sbjct 1040401 TTTCTGGCTGAAAAAGCGGGGGCTTATGCACGGGTTGTCGTTCAGCAATGAGCTTATATC 1040342 Query 443829 TCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871 ||| ||||| || |||||||||| || |||||| | || ||| Sbjct 1040341 TCGCGACGAAGGGCTGCATTGCGATTTTGCCTGTTTGCTGTAC 1040299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588322426179815