Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq67 87.8 2e-12 >seq67 Length=308067 Score = 87.8 bits (96), Expect = 2e-12 Identities = 289/446 (65%), Gaps = 5/446 (1%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||||||| ||||| | |||||||| ||| |||| || || | || || | | | Sbjct 207472 CCCACAGCACATGCTGATGCGCGTCGCCGTCGGCATCCACAAGTCGGATATCGCGGCGGC 207531 Query 104281 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | | | || ||| || |||||| | | || ||||| ||||| | || ||| | | Sbjct 207532 CATCCAAACGTACAACCTCATGTCCGAGAAGTG-GTTCACGCACGCGTCCCCGACCATGT 207590 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || || || || || |||||||| |||||||| | || |||| | | Sbjct 207591 TCAACGCCGGCACGCCCGTCCCGCAAATGTCGTCCTGCTTCCTGGTGGCGCTCAAGAACG 207650 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 |||| ||| | || ||||| | || || || || || ||||| |||| ||| | Sbjct 207651 ACTCCATCGAGGGCATCTACGACACGCTGCGCGAATGCGCCATCATCTCCAAGTCGGCCG 207710 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | || ||||| | ||| | || | ||| | |||| || ||||| || || | Sbjct 207711 GCGGCATTGGCGTCCACGTGCACAACGTGCGCGCCACCGGCTCCTACATTCGTGGTACGA 207770 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || || | || || | || ||||||||||| || || ||| || ||||| | Sbjct 207771 ACGGCACGTCGAACGGCATCGTCCCCATGCTTCGCGTGTTCTCCGACACTGCCCGCTACG 207830 Query 104580 TAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 104636 | | || | || | || ||||| | |||| || || || || || ||||||| Sbjct 207831 TCGACCAGGGCGGCGGGAAACGCAAGGGCGCGTTCGCCGTGTACCTGGAACCGTGGCACG 207890 Query 104637 CGGATATCATGGAGTTCCTTGAGTTG 104662 |||| ||| | |||||||| ||| || Sbjct 207891 CGGACATCTTCGAGTTCCTGGAGCTG 207916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583255937063080