Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq179 116 1e-20 seq334 107 6e-18 seq112 98.7 3e-15 >seq179 Length=351413 Score = 116 bits (128), Expect = 1e-20 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 140509 TACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAG 140568 |||||||||| | | || || | ||||| || ||||| || || || || ||||| | Sbjct 22912 TACCACCACGCAGACGCAGGACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGG 22971 Query 140569 ATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAG 140628 || ||||| ||||| || | || || || || ||||| ||||| || |||||||||| Sbjct 22972 CCAAGGTTCGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGTTGATCAGGAG 23031 Query 140629 GAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAA 140688 | || || || ||||||||||| || || || || | || |||| || || || | Sbjct 23032 GGATACCCTCCTTATCCTGAATCTTGGCCTTCACCGTCTCGATCGTGTCGCCTGAGTCGA 23091 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || | ||| | ||||| || || || || || || || |||||||| Sbjct 23092 CATCCAATGTGATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCAT 23140 Score = 116 bits (128), Expect = 1e-20 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 140509 TACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAG 140568 |||||||||| | | || || ||||| || || ||||| || || || || || || | Sbjct 23374 TACCACCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 23433 Query 140569 ATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAG 140628 | || || ||||| || || || ||||| ||||| || ||||| || |||||||||| Sbjct 23434 CGAGGGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAAATCAGACGCTGTTGATCAGGAG 23493 Query 140629 GAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAA 140688 | || || || || |||||||| || ||||| || | || |||| || || || | Sbjct 23494 GGATGCCCTCCTTGTCCTGAATCTTGGCTTTGACCGTCTCGATCGTGTCGCCTGAGTCGA 23553 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || | ||| | ||||| || || || || || || || |||||||| Sbjct 23554 CATCCAATGTGATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 23602 >seq334 Length=1041161 Score = 107 bits (118), Expect = 6e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | ||||| || ||||| || || || || ||||| || || || | Sbjct 526883 CCACCACGAAGACGCAGAACGAGGTGAAGCGTCGATTCCTTCTGAATGTTGTAGTCGGCG 526824 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | ||| || ||||| ||||| || || ||||||||||| ||||| ||||| || || || Sbjct 526823 AGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGCGGG 526764 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || ||||| || || || || || | || |||| || | || || Sbjct 526763 ATACCCTCCTTGTCCTGGATCTTCGCCTTGACCGTCTCGATCGTGTCGCCGGAGTCGACG 526704 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| ||||| | || || || || |||||||| Sbjct 526703 TCGAGCGTGATGGTCTTCCCGGTCAAGGTCTTCACGAAGATCTGCAT 526657 Score = 91.5 bits (100), Expect = 4e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || || || ||||| || || || || || || | Sbjct 945243 ACCACCACGAAGGCGAAGGACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 945184 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || || || || || || ||||||||||| ||||| || || || || || Sbjct 945183 CAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGG 945124 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || || ||||| || || || || || || |||| || || | | || Sbjct 945123 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGGCCTCGATCGTGTCCGACGACGCCAC 945064 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| | ||||| ||||| || || || || || || ||||| Sbjct 945063 ATCGAGTGTGATCGTCTTGCCGGTAAGCGTCTTGACGAATATTTGCAT 945016 >seq112 Length=1369157 Score = 98.7 bits (108), Expect = 3e-15 Identities = 435/680 (64%), Gaps = 13/680 (2%) Strand=Plus/Minus Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || || ||||| || || || || ||| | || ||||| || ||||| || || ||| Sbjct 1075737 GTGGAGATCATTGCCAACGACCAGGGCAACCGCACGACGCCGTCGTACGTCGCCTTCACC 1075678 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || |||||| | |||||||| | || || || || || || || || | || Sbjct 1075677 GAGACCGAGCGTCTCATTGGTGAGGCCGCCAAGAACCAGGCCGCCCGAAACCCGGAGAAC 1075618 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAA-ATCTACACAATC 349437 ||||| ||||| ||||| || || || | | || || ||| ||| || | Sbjct 1075617 ACGGTCCACGATGCCAAGCGCCTGATCGGCCGCAAGTTCTCCGACCCGATCGTT-CAGGC 1075559 Query 349438 TGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGA 349497 || | || | | || || || || || || || || || || | |||| Sbjct 1075558 CGACATGAAGCTGTGGCCGTTCACGGTCGTCAAGAAGGAGGGCGACCGCCCGGCTTTTGA 1075499 Query 349498 GGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAA-ATTTCATCAATGGTTT 349556 ||| | || || || || || || || |||||| || | || || || ||||| Sbjct 1075498 GGTCCAGTACAAGGGCGA-CACGTGCACGTTCTACCCGGAGGAGATCTCGTCCATGGTCC 1075440 Query 349557 TAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTA 349616 | | || |||| ||| | || || || || | || ||| | || | | || || | Sbjct 1075439 TCATCAAGATGAGGGAGACGGCCGAGGCGTACCTCGGCGAATCCGTCAACAACGCCGTCA 1075380 Query 349617 TTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA 349676 | || || || ||||| || || || | |||||| || || || || ||||| | | Sbjct 1075379 TCACCGTCCCCGCCTACTTCAACGACTCGCAGCGTCAGGCGACGAAGGACGCTGGTATGA 1075320 Query 349677 TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATG 349736 |||| || | || || || | || || || || || || || || || || || || | Sbjct 1075319 TTGCCGGCCTGAACGTCCTCCGTATCATCAACGAGCCGACCGCCGCCGCCATCGCCTACG 1075260 Query 349737 GGCTTGATAAAATGAGTGACCAA----GaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792 | || || || | | | |||| || | || | || || || || | |||||| Sbjct 1075259 GCCTCGACAAGA--ACT--CCAAATCGGAGATGAACGTCCTGATCTTCGACCTGGGTGGT 1075204 Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852 ||||| || ||||| || | || || | || || || || || || || || || || Sbjct 1075203 GGTACGTTCGATGTCTCCGTCCTGACGATCGAGGACGGCATCTTCGAGGTCAAGGCCACC 1075144 Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTT 349912 || ||||| || || || ||||| || || || || || || ||||| ||| || | Sbjct 1075143 GCCGGTGACACCCACCTCGGTGGCGAGGACTTCGACAACCGCCTCGTCCAGCACTTCGCC 1075084 Query 349913 AAAGAATTTAAGCGTCAAGC 349932 | || || ||||| ||||| Sbjct 1075083 GAGGAGTTCAAGCG-CAAGC 1075065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515241450730601