Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq67 488 6e-133 >seq67 Length=308067 Score = 488 bits (540), Expect = 6e-133 Identities = 1187/1782 (67%), Gaps = 112/1782 (6%) Strand=Plus/Plus Query 19118 ATGCGAGTCGCGGTCGGCATCCAT--GGCGACGACCTCCCGCGAGTCCGCGAGACATACG 19175 ||||| ||||| ||||||||||| | || || || || | | | | || ||| Sbjct 207488 ATGCGCGTCGCCGTCGGCATCCACAAGTCG--GATATCGCGGCGGCCATCCAAACGTACA 207545 Query 19176 ACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGA 19235 |||| ||| | |||||| |||||||||||| | |||||| | ||||||||||| ||| Sbjct 207546 ACCTCATGTCCGAGAAGTGGTTCACGCACGCGTCCCCGACCATGTTCAACGCCGGCACGC 207605 Query 19236 ACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCA 19295 | |||||| |||||| ||| ||||| ||||| | ||| | ||| ||| ||||||| Sbjct 207606 CCGTCCCGCAAATGTCGTCCTGCTTCCTGGTGGCGCTCAAGAACGACTCCATCGAGGGCA 207665 Query 19296 TCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCC 19355 ||||||| ||||| || ||||| ||||||||||| | |||| || || || ||| Sbjct 207666 TCTACGACACGCTGCGCGAATGCGCCATCATCTCCAAGTCGGCCGGCGGCATTGGCGTCC 207725 Query 19356 AC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGAC 19414 || ||| | || | || | | || | || ||| |||||||| | || Sbjct 207726 ACGTGCAC-AACGTGCGCGCCACCGGCTCCTACATTCGTGGTACGAACGGCACGTCGAAC 207784 Query 19415 GGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGC 19474 || |||||||| ||||| ||||| ||| | |||| ||| | |||||| ||||||| ||| Sbjct 207785 GGCATCGTCCCCATGCTTCGCGTGTTCTCCGACACTGCCCGCTACGTCGACCAGGGCGGC 207844 Query 19475 GGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGAT 19534 || |||||||||||| |||||||| | ||||| || || |||||||||||| || | || Sbjct 207845 GGGAAACGCAAGGGCGCGTTCGCCGTGTACCTGGAACCGTGGCACGCGGACATCTTCGAG 207904 Query 19535 TTCC------------------------TCGAACTGC-GCCT------------------ 19551 |||| | |||| || |||| Sbjct 207905 TTCCTGGAGCTGAAAAAGGTACCCTGGGTTGAACAGCTGCCTCCCAACGTATGTCTCTGA 207964 Query 19552 ------------GAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTC-ACGGCCT 19598 |||||| || | || ||| || ||| ||||| || ||||||| Sbjct 207965 GCTTTCGGTGCAGAACCACGGCAAGGAAGAGGAACGTGCTCGTGACCTGTTTTACGGCCT 208024 Query 19599 TGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGT 19658 | |||||||| || || |||||| || || || |||| | ||| || | | Sbjct 208025 T-TGGATTCCCGATCTGTTCATGCAGCGTGTGCAGGCCGACGCCCACTGGTCGTTGTTCT 208083 Query 19659 GCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTACC 19718 ||||| |||| || || || | ||||||| ||||| | |||| || | ||| | Sbjct 208084 GCCCGAACGAGGCGCCCGGTCTGGCGGACGTCTGGGGCGACGAGTTCGCTGCGCTGTTC- 208142 Query 19719 GGACT-TACGTAGCCCAGGGCCGGTTCAAG--AAGGTGGTCCGGGCCCGGGACGTCTGGG 19775 | || || | | |||||||| ||| ||| | || |||| | |||| | ||| Sbjct 208143 GAACGCTATGAGAACGAGGGCCGG--CAACGTAAGACGATCAGGGCGCAGGACCTGTGGT 208200 Query 19776 ACCGCG-TCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCC 19834 | ||| |||| | ||||||||| || || || || |||||| ||||||||||| Sbjct 208201 TC-GCGATCCTGGAGGCCCAGGTCGAAACGGGGACGCCCTACATGATGTACAAGGACGCT 208259 Query 19835 GCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACT 19894 ||| |||||| || ||||||||| | || |||||||| |||||||| || Sbjct 208260 TGCAACAGCAAGTCGAACCAGAAGAACCTGGGGACGATCAAGAGCAGTAACCTGTGCACG 208319 Query 19895 GAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGC 19954 |||||| | ||| | | |||||||||| ||||| || || |||||||| | Sbjct 208320 GAAATCGTCGAGTACACGTCGGCGGACGAGACGGCCGTCTGCAACCTGGCGTCGATCGCA 208379 Query 19955 CTGCCGACTTTCGTCAAGGCCTCCTCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGG 20014 ||| | | ||||||| | | || | |||||||| || ||||||| ||||| Sbjct 208380 CTGTCCAAGTTCGTCACTGACGCCACGTTCGACTTCCATAAGCTGTACGACGTGACGTAC 208439 Query 20015 GTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCC---GACCGAGGCG 20071 || |||| || ||||| || ||||| | |||| |||||| | |||| Sbjct 208440 ACTGTAACGCTGAACCTGAACAAGGTGATCGACGGCAACTATTACCCTGTGCCCGA---A 208496 Query 20072 GCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGAC 20131 |||||| ||||| ||||| ||| |||| ||| ||||||||||||||||| || ||| Sbjct 208497 GCGCGCCGATCGAACATGCGACACAGGCCCGTCGGAATCGGCGTCCAGGGCCTTGCGGAC 208556 Query 20132 GTTTTCAT---GATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAG 20188 | ||||| ||||| | | | |||||| || ||||||||| || ||| Sbjct 208557 GCCTTCATCCAGATGC---GGTACCCGTTCGACTCGCCGGAGGCGCGCGCACTGAACCGC 208613 Query 20189 GGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAG 20248 | |||||||||| | | ||| |||||| | | || || || ||| || Sbjct 208614 GACATCTTCGAGACGATCTACTTTGCGGCCTGCACTGCCTCCAAGGATCTGGCCGTTAAG 208673 Query 20249 GACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGAC 20308 |||||||| |||||| ||||| || || |||||| |||| || |||||| ||| Sbjct 208674 GACGGCCCCTACGAGTCGTTCCCTGGCAGCCCGGCGTCCCAGGGCATTCTCCAGTTCGAC 208733 Query 20309 ATGTGG--------GGCGTCACTGAGAATGAGTTTTGGAGCGCCCTCAAGGTTGAGATCA 20360 |||||| | |||| | | ||| | | ||| ||| || |||| || ||| Sbjct 208734 ATGTGGAATGTAAAGCCGTCGTCGCG-ATGGGACTGGGA-CGCGCTGAAGGCCGATATC- 208790 Query 20361 AGACC--CACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGC 20418 | || || || | || || |||||||| ||||||| ||||| || || || ||| Sbjct 208791 -GCCCGGCATGGCATGCGGAATTCGTTGCTGCTCGCGCCGATGCCCACAGCGTCAACCAG 208849 Query 20419 CCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCG 20478 ||||||| |||||||||||||| |||||||||||||||| |||||||||| | | || Sbjct 208850 CCAGATCCTGGGGAACAACGAGTGCTTCGAGCCGTACACGAGCAACATCTACGCGAGACG 208909 Query 20479 TACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGTCCGCGACTTGCAGAAGAT 20538 | ||||| ||||||||| | | | |||||||||||| | ||| || || Sbjct 208910 TGTGCTGGCTGGTGAGTTCACCGTCATCAACAAGCACCTGCTGGTGGACCTGATCAACCG 208969 Query 20539 CGATATGT-GGTCGCCCAAAATTAAG-AATGAAATTGTCCGAGCCGGCGGGAGCGTCCAG 20596 | ||| || || | | || | | | | | | | |||| |||||| Sbjct 208970 GGGCCTGTGGGACGAC--GACTTGCGCCACCAGCTGATGGCACACAACGGGTCGGTCCAG 209027 Query 20597 -GCATTG---GATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCC 20652 ||||| || ||||| ||| | ||||||||| | |||| |||||| ||||| ||| Sbjct 209028 AACATTGACCGA-ATCCCGCAGGATCTCAAGGACCTGTACAAGACCGTTTGGGAGATCAA 209086 Query 20653 ACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTC 20712 |||||| | || |||||||| |||||||||||||||| ||| |||||||| || || Sbjct 209087 GCAGAAGTCGCTGATTGACATGGCCGCCGATCGCGGCGCCTTCATTGACCAGTCGCAATC 209146 Query 20713 GCTCAATGTCTTCATG---GAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTA 20769 | |||| ||| |||| || | | | | | | ||||||| || |||||| | || Sbjct 209147 GTTCAACGTCCACATGACCGACATT---AACTTTGGCAAGCTGACGTCGATGCATTTCTA 209203 Query 20770 CGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCG 20811 || |||| || || |||||||||||||||||||| ||||| Sbjct 209204 CGCCTGGACTAAAGGCCTCAAGACGGGCATGTACTACCTGCG 209245 Score = 468 bits (518), Expect = 6e-127 Identities = 1216/1834 (66%), Gaps = 116/1834 (6%) Strand=Plus/Minus Query 78192 TCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGA 78251 ||||| |||||||||||||||||||| || || |||| |||| | ||||| || Sbjct 209246 TCGCAGGTAGTACATGCCCGTCTTGAGGCCTTTAGTCCAGGCGTAGAAATGCATCGACGT 209187 Query 78252 CAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATGTA 78311 ||||||| | | | || |||| || ||||| ||| || |||||||| ||| | Sbjct 209186 CAGCTTGCCAAAGTTAATGTCGGTCATGTGGACGTTGAACGATTGCGACTGGTCAATGAA 209127 Query 78312 CGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTCCG 78371 || ||||| ||||| |||||||| || | |||||| ||| |||||||| | |||| Sbjct 209126 GGCGCCGCGATCGGCGGCCATGTCAATCAGCGACTTCTGCTTGATCTCCCAAACGGTCTT 209067 Query 78372 GTAAATGGCCTTCAGCTCTTCCTGGAT---GTCCAGCGCTTGTACGCTCCCACCGGCTCG 78428 ||| | | |||| || || | | |||| ||| | || || ||| | | Sbjct 209066 GTACAGGTCCTTGAGATCCTGCGGGATTCGGTCAATGTTCTGGACCGACCCGTTGTGTGC 209007 Query 78429 CACAATTTCATT-CTTAATTTGAGGGTTC-CAG----CGATTGATCTTCTGAAGATCCCG 78482 || | | | | || | | | | ||| || |||||| || ||| Sbjct 209006 CATCAGCTGGTGGCGCAAGTCGTCGTCCCACAGGCCCCGGTTGATC------AGGTCCAC 208953 Query 78483 GACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTT 78542 | ||||||| ||| || | | |||||| || ||||| || | | ||||||||| Sbjct 208952 CAGCAGGTGCTTGTTGATGACGGTGAACTCACCAGCCAGCACACGTCTCGCGTAGATGTT 208893 Query 78543 GGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGG 78602 | |||||||||||||||| |||||||||||||| ||||||| ||| || || || || Sbjct 208892 GCTCGTGTACGGCTCGAAGCACTCGTTGTTCCCCAGGATCTGGCTGGTTGACGCTGTGGG 208833 Query 78603 CATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAGGCC 78662 ||| || |||| ||| | |||||||| | |||||| ||| ||| |||| || | Sbjct 208832 CATCGGCGCGAGCAGCAACGAATTCCGCATGCCATGCCGGGCGATATCGGCCTTCAGCGC 208773 Query 78663 GTCCCAAAATTCATTCGCCGCGA------TCC--CCCACATGTCCGGTTGAAGGATACCC 78714 ||||| | | | |||| ||| | | ||||||||| || || || ||| Sbjct 208772 GTCCC--AGTCCCATCGCGACGACGGCTTTACATTCCACATGTCGAACTGGAGAATGCCC 208715 Query 78715 TCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT 78774 | ||||||||| || ||||| |||||| | || |||| ||| || || Sbjct 208714 TGGGACGCCGGGCTGCCAGGGAACGACTCGTAGGGGCCGTCCTTAACGGCCAGATCCTTG 208655 Query 78775 GACTC-GAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGC 78833 || | | ||| |||||| ||| | | |||||||||| | ||| || ||||||| Sbjct 208654 GAGGCAGTGCA-GGCCGCAAAGTAGATCGTCTCGAAGATGTCGCGGTTCAGTGCGCGCGC 208596 Query 78834 CTTGGTCTCGTCGAACGAAAGGCCGAGCATC---ATGAAGACATCGGCCAGGCCCTGGAC 78890 || | | |||||||| || ||||| |||||| | || || ||||||||||| Sbjct 208595 CTCCGGCGAGTCGAACG---GGTACCGCATCTGGATGAAGGCGTCCGCAAGGCCCTGGAC 208539 Query 78891 GCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTC---GGGTA 78947 |||||| ||| || | ||| ||||||| || |||| ||| |||| | ||||| Sbjct 208538 GCCGATTCCGACGGGCCTGTGTCGCATGT---TCGATCGGCGCGCTTCGGGCACAGGGTA 208482 Query 78948 AAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAA 79007 | |||| | ||||| || ||||||||| |||| || ||||| ||||||| Sbjct 208481 ATAGTTGCCGTCGATCACCTTGTTCAGGTTCAGCGTTACAGTGTACGTCACGTCGTACAG 208422 Query 79008 TTTGGCGAAATC-AAAATGATTTCCTTTGATGAAAGTCGGTAGGCACAGCGATGCCAGGT 79066 || ||| || || || | | ||| ||| | | || | ||| ||||||| Sbjct 208421 CTTATGGAAGTCGAACGTGGCGT-CAGTGACGAACTTGGACAGTGCGATCGACGCCAGGT 208363 Query 79067 TGCACACGGCCGTCTCGTCCG--GGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGA 79124 |||| |||||||||||||||| | | | | ||||| |||||| ||||||| ||| Sbjct 208362 TGCAGACGGCCGTCTCGTCCGCCGACGTGTA--CTCGACGATTTCCGTGCACAGGTTACT 208305 Query 79125 CGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCA 79184 |||||| || || | |||||||||||| ||| ||| || ||||||||||| Sbjct 208304 GCTCTTGATCGTCCCCAGGTTCTTCTGGTTCGACTTGCTGTTGCAAGCGTCCTTGTACAT 208245 Query 79185 CATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGC 79244 |||||| |||||||| || || ||||| || || | || ||| | |||| | || Sbjct 208244 CATGTAGGGCGTCCCCGTTTCGACCTGGGCCTCCAGGATCGCGAACCACAGGTCCTGCGC 208185 Query 79245 CCGGACAACCTTCTTGTACCGACCCT-GTGCGACGTA-CGTCCGGTACAACTCGTTGAAA 79302 || || ||| | ||| |||| || | | || ||| | | ||| | | ||| Sbjct 208184 CCTGATCGTCTTACGTTGCCGGCCCTCGTTC-TCATAGCGTTC-GAACAGCGCAGCGAAC 208127 Query 79303 GCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCC 79362 | || || |||| || | ||| || || ||||| |||||| | || ||||| Sbjct 208126 TCGTCGCCCCAGACGTCCGCCAGACCGGGCGCCTCGTTCGGGCAGAACAACGACCAGTGG 208067 Query 79363 TCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGT-GAAGAGGTC 79421 |||| || || || |||||| || || || ||||| | |||||| || ||||| Sbjct 208066 GCGTCGGCCTGCACACGCTGCATGAACAGATCGGGAATCCA-AAGGCCGTAAAACAGGTC 208008 Query 79422 GCGGCAACGCATCTCCTCGTCGCCCTGGTTC----------------AGAC--------- 79456 || ||| ||| || | ||| |||||| |||| Sbjct 208007 ACGAGCACGTTCCTCTTCCTTGCCGTGGTTCTGCACCGAAAGCTCAGAGACATACGTTGG 207948 Query 79457 ---GCAG---------------------------CTCGAGAAAGTCCATGATGTCGGCGT 79486 |||| ||| || || || | |||||| |||| Sbjct 207947 GAGGCAGCTGTTCAACCCAGGGTACCTTTTTCAGCTCCAGGAACTCGAAGATGTCCGCGT 207888 Query 79487 GCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGT 79546 ||||||| ||||| || | |||||||| |||||||| || ||||||||||||| ||||| Sbjct 207887 GCCACGGTTCCAGGTACACGGCGAACGCGCCCTTGCGTTTCCCGCCGCCCTGGTCGACGT 207828 Query 79547 ACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCG-TCGGCGACGCCGTTC 79605 | ||||| |||| | ||| || || |||||||| ||||||||| ||| || ||||||| Sbjct 207827 AGCGGGCAGTGTCGGAGAACACGCGAAGCATGGGGACGATGCCGTTCGACG-TGCCGTTC 207769 Query 79606 GTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCC 79664 || || || | ||| | || || | ||| | ||| ||||| || ||||| || Sbjct 207768 GTACCACGAATGTAGGAGCCGGTGGCGCGCACGTT-GTGCACGTGGACGCCAATGCCGCC 207710 Query 79665 GGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTC 79724 || | ||||||||||| ||||| || ||||| ||||||||||||||||| ||||| Sbjct 207709 GGCCGACTTGGAGATGATGGCGCATTCGCGCAGCGTGTCGTAGATGCCCTCGATGGAGTC 207650 Query 79725 GTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAA 79784 || ||| | || |||||||||||| |||||| || ||| | ||| ||||||||||| Sbjct 207649 GTTCTTGAGCGCCACCAGGAAGCAGGACGACATTTGCGGGACGGGCGTGCCGGCGTTGAA 207590 Query 79785 GAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGAC 79844 | |||||| | |||||||||||| |||| | | ||| || | |||||| | || | Sbjct 207589 CATGGTCGGGGACGCGTGCGTGAACCACTTCTCGGACATGAGGTTGTACGTTTGGATGGC 207530 Query 79845 GCGCGGGAGGTCGTCGCC--GTGGATGCCGACCGCGACGCGCATGAAGAGGTACTG-GGG 79901 || || || || | |||||||||||| ||||||||||| | | || ||| ||| Sbjct 207529 CGCCGCGATATC--CGACTTGTGGATGCCGACGGCGACGCGCATCAGCATGTGCTGTGGG 207472 Query 79902 CGTCTCGCCGACATTCAGGTAGCCCTTCTGCAGG 79935 || |||| ||| || || | ||||| ||||| Sbjct 207471 CG-CTCGGCGATCTTGCCGTCGACCTTCAGCAGG 207439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548520226674480