Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq67 233 2e-56 seq556 107 2e-18 >seq67 Length=308067 Score = 233 bits (258), Expect = 2e-56 Identities = 283/380 (74%), Gaps = 4/380 (1%) Strand=Plus/Plus Query 53246 ACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCT 53305 |||||| || | ||| | | |||| || |||||||| | || ||| |||||||||| Sbjct 207539 ACGTACAACCTCATGTCCGAGAAGTGGTTCACGCACGCGTCCCCGACCATGTTCAACGCC 207598 Query 53306 GGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATC 53365 || ||| ||| || |||||| |||||||||||||||| | ||| | ||||| ||| Sbjct 207599 GGCACGCCCGTCCCGCAAATGTCGTCCTGCTTCCTGGTGGCGCTCAAGAACGACTCCATC 207658 Query 53366 GACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATC 53425 || ||||||||||| ||||| || || ||| ||||||||||| | | || || || Sbjct 207659 GAGGGCATCTACGACACGCTGCGCGAATGCGCCATCATCTCCAAGTCGGCCGGCGGCATT 207718 Query 53426 GGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGT 53484 || ||||| ||| | ||||| || || | |||| | || || ||||||||| Sbjct 207719 GGCGTCCACGTGCAC-AACGTGCGCGCCACCGGCTCCTACATTCGTGGTACGAACGGCA- 207776 Query 53485 CGCCGAT-GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACC 53543 || ||| || ||||| || ||||| ||||| ||| | |||| ||||| |||||| ||| Sbjct 207777 CGTCGAACGGCATCGTCCCCATGCTTCGCGTGTTCTCCGACACTGCCCGCTACGTCGACC 207836 Query 53544 AGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACA 53603 |||| || ||||| |||||||| |||||||| | ||||| || ||||||||||| |||| Sbjct 207837 AGGGCGGCGGGAAACGCAAGGGCGCGTTCGCCGTGTACCTGGAACCGTGGCACGCGGACA 207896 Query 53604 TTATGGAGTTTCTCGAGCTG 53623 | | ||||| || |||||| Sbjct 207897 TCTTCGAGTTCCTGGAGCTG 207916 Score = 179 bits (198), Expect = 4e-40 Identities = 557/850 (66%), Gaps = 34/850 (4%) Strand=Plus/Plus Query 55094 TTTGACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTC 55153 || ||||| | ||||| |||| |||||| ||| || | |||||||||| ||| Sbjct 208407 TTCGACTTCCATAAGCTGTACGACGTGACGTACACTGTAACGCTGAACCTGAACAAGGTG 208466 Query 55154 ATCGACAAGAATTACTACCC---GACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGG 55210 |||||| || || ||||| | | |||||| ||| || ||| | || ||| || Sbjct 208467 ATCGACGGCAACTATTACCCTGTGCCCGAAGCG---CGCCGATCGAACATGCGACACAGG 208523 Query 55211 CCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCAT---GATGCTCGGATTGCCC 55267 ||| ||| ||||| || |||||| | || ||| |||||| ||||| | | || Sbjct 208524 CCCGTCGGAATCGGCGTCCAGGGCCTTGCGGACGCCTTCATCCAGATGC---GGTACCCG 208580 Query 55268 TTCGACTCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGC 55326 ||||||||| || || | | | |||| ||||||||| || || ||||||||||| Sbjct 208581 TTCGACTCGCCGGAGGCGCGCGCACTGAACCGCGACATCTTCGAGACG-ATCTACTTTGC 208639 Query 55327 AGCGCTCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGA 55386 || | | || ||||||| | | || || |||||||| |||||| || Sbjct 208640 GGCCTGCACTGCCTCCAAGGATCTGGCCGTTAAGGACGGCCCCTACGAGTCGTTCCCTGG 208699 Query 55387 TTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGG---GGCAAGTCT--GACCCC 55441 || || | |||| ||||||||||||| | ||| | ||| | | | | Sbjct 208700 CAGCCCGGCGTCCCAGGGCATTCTCCAGTTCGACATGTGGAATGTAAAGCCGTCGTCGCG 208759 Query 55442 ATG----TTTGACAAGTTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCT 55497 ||| | ||| | ||||| || || | | ||| | || || || |||| Sbjct 208760 ATGGGACTGGGACGCGCTGAAGGCCGATATCGCCCGGCATGGCATGCGGAATTCGTTGCT 208819 Query 55498 CGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGA 55557 | ||||| ||||| || ||||| || |||||| |||| ||||||||| ||||| Sbjct 208820 GCTCGCGCCGATGCCCACAGCGTCAACCAGCCAGATCCTGGGGAACAACGAGTGCTTCGA 208879 Query 55558 GCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAA 55617 ||||||||||| |||||||||| | | || || || |||||||| | | ||||| Sbjct 208880 GCCGTACACGAGCAACATCTACGCGAGACGTGTGCTGGCTGGTGAGTTCACCGTCATCAA 208939 Query 55618 CAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAGAT---CAAGAC 55674 ||||||||| | ||||||| || | |||| || | | | | Sbjct 208940 CAAGCACCTGCTGGTGGACCTGATCAACCGGGGCCTGTGGGACGACGACTTGCGCCACCA 208999 Query 55675 GGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGAG---ATTCCTCTGCGTCTCAA 55731 | || | | |||||| || |||||||| | || || || | | |||||| Sbjct 209000 GCTGATGGCACACAACGGG---TCGGTCCAGAACATTGACCGAATCCCGCAGGATCTCAA 209056 Query 55732 GGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGA 55791 ||| | ||| ||| || |||||||| |||||| |||||||||||| || || Sbjct 209057 GGACCTGTACAAGACCGTTTGGGAGATCAAGCAGAAGTCGCTGATTGACATGGCCGCCGA 209116 Query 55792 TCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCAC- 55850 ||| || || | ||| |||||||| || || | ||| || ||| || | || || Sbjct 209117 TCGCGGCGCCTTCATTGACCAGTCGCAATCGTTCAACGTCCACAT-GACCGACATTAACT 209175 Query 55851 TGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGT 55910 | | |||| ||| |||||||| || |||| |||| || || ||||||||||| |||| Sbjct 209176 TTGGCAAGCTGACGTCGATGCATTTCTACGCCTGGACTAAAGGCCTCAAGACGGGCATGT 209235 Query 55911 ACTATCTGCG 55920 |||| ||||| Sbjct 209236 ACTACCTGCG 209245 Score = 82.4 bits (90), Expect = 8e-11 Identities = 194/285 (68%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 53657 CGTGACCTGTTT-ACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715 |||||||||||| || || || |||||||| || || |||||||| ||| || || Sbjct 208005 CGTGACCTGTTTTACGGC-CTTTGGATTCCCGATCTGTTCATGCAGCGTGTGCAGGCCGA 208063 Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGA 53775 || | |||| || | |||||||||||| ||||| || || |||| || || Sbjct 208064 CGCCCACTGGTCGTTGTTCTGCCCGAACGAGGCGCCCGGTCTGGCGGACGTCTGGGGCGA 208123 Query 53776 GGAGTTTAACGAGATGTATCGGACG-TACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTC 53833 ||||| | | ||| ||| ||| || | || | ||||||| | |||| | || Sbjct 208124 CGAGTTCGCTGCGCTGT-TCGAACGCTATG-AGAACGAGGGCCGGCAACGTAAGACGATC 208181 Query 53834 AAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTAC 53893 | ||||| || | ||| || ||||| || |||||| || ||||| ||||| ||| Sbjct 208182 AGGGCGCAGGACCTGTGGTTCGCGATCCTGGAGGCCCAGGTCGAAACGGGGACGCCCTAC 208241 Query 53894 ATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 ||| |||||||| | |||| ||| |||||||||||| Sbjct 208242 ATGATGTACAAGGACGCTTGCAACAGCAAGTCGAACCAGAAGAAC 208286 >seq556 Length=883518 Score = 107 bits (118), Expect = 2e-18 Identities = 243/362 (67%), Gaps = 19/362 (5%) Strand=Plus/Plus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 |||| ||||| || || |||| |||||||||| || || | || ||| | || || Sbjct 618017 CGCCTTCTCGACGAATTCGCGGACCGTGTGCGTCTCGCCGGTCGCGATGACGTAGTCATC 618076 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 || || |||||||| ||| | ||||||||| ||||||||||| ||||||||||| Sbjct 618077 CGGCTTCTCCTGCTGCATCATCATCCACATGGCAGCGACGTAGTCCTTGGCGTGCCCCCA 618136 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAGCTCGATTGGCTTGGCCGTCTTGTT------CCA 124654 ||| |||||||| || | ||| ||||| | | ||| ||| |||| || Sbjct 618137 GTCACGCTTGGCGTCGATGTTCCCGAGGTACA-------GGCAGTCCTGTTTGCCGGCCG 618189 Query 124655 C--TCC--GCCAAACCCAGTGTAATCTTGCGCGTCACAAAC-TCGGAACCGCGTCGCTCA 124709 | | | || | | | || |||||||| ||||| ||| |||| || || ||| Sbjct 618190 CGATGCGAGCGACGGCACGCGTGATCTTGCGGGTCACGAACGTCGG-GCCACGACGCGGG 618248 Query 124710 GACTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTT 124769 |||||||||||||| |||||| | |||| | ||||||| || |||||||| Sbjct 618249 CTTTCGTGGTTGAACAGGATGCCATTGGACGCGTGTAGGCCGTACGCTTCACGGTAGTTG 618308 Query 124770 TTCGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGG 124829 ||||| || | | |||||| ||| | || ||| || |||||||| || Sbjct 618309 ACAACAATCCAGTAGGCGTACTGCTTGGCAACGGCGTATGGGGAACGCGGGTAGAACGGC 618368 Query 124830 GT 124831 || Sbjct 618369 GT 618370 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 158944 AACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGT 159003 || ||||||| |||||||||| || ||||| || || |||| || || ||| Sbjct 618030 AATTCGCGGACCGTGTGCGTCTCGCCGGTCGCGATGACGTAGTCATCCGGCTTCTCCTGC 618089 Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCA 159063 || | ||| | ||||||||| ||||||| |||| ||||| |||||||| |||||||| Sbjct 618090 TGCATCATCATCCACATGGCAGCGACGTAGTCCTTGGCGTGCCCCCAGTCACGCTTGGCG 618149 Query 159064 TCCATGTTCCCGAG 159077 || ||||||||||| Sbjct 618150 TCGATGTTCCCGAG 618163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547211437586600