Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq334 95.1 8e-15 seq179 91.5 9e-14 >seq334 Length=1041161 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||| || | || || || ||||| |||||||| || || | Sbjct 526883 CCACCACGAAGACGCAGAACGAGGTGAAGCGTCGATTCCTTCTGAATGTTGTAGTCGGCG 526824 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | || ||||| || || || ||||| || | |||||| ||||||||||| Sbjct 526823 AGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGCGGG 526764 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||||||||||| |||||| || | || || ||||| || || || Sbjct 526763 ATACCCTCCTTGTCCTGGATCTTCGCCTTGACCGTCTCGATCGTGTCGCCGGAGTCGACG 526704 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || || ||||| || || ||||| || |||||||| Sbjct 526703 TCGAGCGTGATGGTCTTCCCGGTCAAGGTCTTCACGAAGATCTGCAT 526657 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||||| ||||| || ||||| ||| || || ||||| || || | | Sbjct 527345 CCGCCACGAAGACGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCA 527286 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || || || || || | |||||||||||| ||||| Sbjct 527285 AGCGTGCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGGTCGGGCGGG 527226 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||| ||| | || || | || || || | || || Sbjct 527225 ATGCCCTCCTTGTCCTGGAT-TTTCGCCTTGACAGTCTCGATCGTATCACCAGAGTCGAC 527167 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || ||||| || || || | || ||||| || ||||||||| Sbjct 527166 GTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 527118 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| || | || || || |||||| || || || || || | || || ||| Sbjct 526643 AGACGCAGAACAAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGGCTAGCGTCCGC 526584 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || ||||| || || | ||||| ||||| ||||| | |||||| Sbjct 526583 CCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGAATACCCTCC 526524 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | || ||||| |||| || || || | || Sbjct 526523 TTGTCCTGGATC-TTGGCCTTCACGGTCTCGATCGTGTCACCGCTGTCGACGTCGAGCGT 526465 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTGT 34715 || || || || || | || ||||| || ||||||||| | || || Sbjct 526464 AATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGGTCATCGT 526417 Score = 82.4 bits (90), Expect = 5e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || ||||| || || | || || || |||| || || || ||||| ||||| Sbjct 945207 CTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCAAA 945148 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || | |||||||||||||||||| | ||||||||||| |||||| Sbjct 945147 GATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTT 945100 >seq179 Length=351413 Score = 91.5 bits (100), Expect = 9e-14 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| || | ||| || || |||||| || ||||| || || | || || || Sbjct 22461 AGACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGA 22520 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | |||||| ||||||||||| | |||||| Sbjct 22521 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCC 22580 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 || || |||||| || | || || || || |||| ||||| |||| || Sbjct 22581 TTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTATCGCCGCTGTCCACGTCCAGTGTA 22640 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || | ||| || || || |||||||| Sbjct 22641 ATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 22678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727041543411