Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq179 131 1e-25 seq334 102 7e-17 seq634 98.7 9e-16 >seq179 Length=351413 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | ||||| ||||| || || || Sbjct 22909 ATGCAGATCTTCGTCAAGACGCTGACAGGGAAGACCATTACGCTTGACGTCGACTCGGGT 22850 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || ||||| ||||| || || || || || || ||| Sbjct 22849 GACACGATCGAAACTGTGAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAA 22790 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| || || ||| | |||| |||||| Sbjct 22789 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAAC 22730 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||||||||| || ||| | ||| ||||| |||| ||||| Sbjct 22729 ATCCAGAAGGAGTCGACGTTGCATCTCGTTCTGCGTCTGCGTGGTGG 22683 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || | || || || | | Sbjct 23140 ATGCAGATCTTCGTCAAGACGCTGACAGGGAAGACCATCACATTGGATGTCGACTCAGGC 23081 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| ||| || || ||||| || || || || || || || |||||| Sbjct 23080 GACACGATCGAGACGGTGAAGGCCAAGATTCAGGATAAGGAGGGTATCCCTCCTGATCAA 23021 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || ||||| || | ||| | ||||||||||| Sbjct 23020 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGCCGAACCTTGGCCGATTACAAC 22961 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||||||||| | || ||||| ||||| |||| ||||| Sbjct 22960 ATCCAGAAGGAGTCGACACTTCACTTGGTCCTGCGTCTGCGTGGTGG 22914 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || || | || || || | | Sbjct 23602 ATGCAGATCTTCGTCAAGACGCTTACGGGCAAGACCATCACATTGGATGTCGACTCAGGC 23543 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| ||||||| || ||||| ||||| || ||||| || || |||||| Sbjct 23542 GACACGATCGAGACGGTCAAAGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAA 23483 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||| || || |||| || || ||| | |||| |||||| Sbjct 23482 CAGCGTCTGATTTTTGCCGGAAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAAC 23423 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||||||||| | ||| | || ||||| |||| ||||| Sbjct 23422 ATCCAGAAGGAGTCGACGCTGCATCTCGTCCTGCGTCTGCGTGGTGG 23376 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGA-ACCGTC 27046 |||||||| || || || || ||||| |||||| | ||||| || || ||||| | || | Sbjct 22678 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACGATTACACTGGACGTGGACAGCGGC 22619 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || |||| |||| ||| || || || || || || || ||||| || || || || Sbjct 22618 -GATACGATCGAGACGGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCGGACCA 22560 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || |||| || || ||| | |||| ||||| Sbjct 22559 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAA 22500 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || ||||||||||| | ||| | || ||||| |||| ||||| Sbjct 22499 CATCCAGAAGGAGTCGACACTGCATCTCGTCCTGCGTCTGCGTGGTGG 22452 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | ||||| ||||| || || || Sbjct 23371 ATGCAGATCTTCGTCAAGACGCTGACAGGAAAGACCATTACGCTTGACGTCGACTCGGGT 23312 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||| || || ||||| |||||||| || || || || || || Sbjct 23311 GACACAATCGAAACGGTGAAGGCCAAGATTCAGGACAAAGAGGGTATTCCCCCGGACCAG 23252 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| || | ||| | |||| |||||| Sbjct 23251 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTCGCCGACTACAAC 23192 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||||||||| || ||| | ||| |||| |||| || || Sbjct 23191 ATCCAGAAGGAGTCGACGTTGCATCTCGTTCTGCGACTGCGTGGCGG 23145 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGA-ACCGTC 27046 |||||||| || || || || ||||| |||||| | ||||| || || ||||| | || | Sbjct 23833 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACGATTACGCTGGATGTGGACAGCGGC 23774 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| |||| ||| || || || || || || || ||||| || || || || Sbjct 23773 -GACACGATCGAGACGGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCTGACCA 23715 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | |||||||| || |||| ||| | || | | || ||||| Sbjct 23714 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGGCGCACGCTGGCGGACTACAA 23655 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| ||||||||||| | ||| | || ||||| |||| || || Sbjct 23654 CATTCAGAAGGAGTCGACGCTGCATCTCGTCCTGCGTCTGCGTGGCGG 23607 >seq334 Length=1041161 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGA-ACCG 27044 |||||||||| || || || || ||||| |||||| | ||||| || || || || | || Sbjct 526424 CCATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATTACGCTCGACGTCGACAGCG 526483 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 ||| |||| |||| || || || || || ||||| || || || || ||||| Sbjct 526484 GT-GACACGATCGAGACCGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCGCCCGAC 526542 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || ||||| | || | ||||||||| || | || ||| | ||| | |||| ||| Sbjct 526543 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGGCGGACGCTAGCCGACTAC 526602 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || || ||||||||||| | || | ||| ||||| | || ||||| Sbjct 526603 AATATCCAGAAGGAGTCGACGCTGCACCTTGTTCTGCGTCTCCGTGGTGG 526652 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| || || || || ||||||||| | || || || || |||| |||| Sbjct 945016 ATGCAAATATTCGTCAAGACGCTTACCGGCAAGACGATCACACTCGATGTGGCGTCGTCG 945075 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| ||| ||||| || || || ||||| || ||||| || || || ||| Sbjct 945076 GACACGATCGAGGCCGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAA 945135 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || |||| ||| | || | |||| |||||| Sbjct 945136 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGCACGCTGGCCGACTACAAC 945195 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || ||||||||||| Sbjct 945196 ATCCAGAAGGAGTCGAC 945212 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||||| ||| | || || || || || || | | Sbjct 526657 ATGCAGATCTTCGTGAAGACCTTGACCGGGAAGACCATCACGCTCGACGTCGACTCCGGC 526716 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| |||||| || || || ||||| || || || || || || || Sbjct 526717 GACACGATCGAGACGGTCAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCGGACCAG 526776 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || | || || | || | |||| |||||| Sbjct 526777 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACACTCGCCGACTACAAC 526836 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| ||||| ||||| | || | ||| ||||| | || ||||| Sbjct 526837 ATTCAGAAGGAATCGACGCTTCACCTCGTTCTGCGTCTTCGTGGTGG 526883 >seq634 Length=872753 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || || || || || || | Sbjct 526881 ATGCAGATCTTCGTGAAGACCCTGACGGGTAAGACGATCACGCTCGATGTCGACTCGGGC 526822 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| ||||| || || || ||||| || || || || || || ||| Sbjct 526821 GACACGATCGAGACCGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAA 526762 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || | || || | || | |||| |||||| Sbjct 526761 CAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGGCGCACGCTCGCCGACTACAAC 526702 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||||||||| || || | || | ||| |||| ||||| Sbjct 526701 ATCCAGAAGGAGTCGACGTTGCACCTCGTCCTCCGTCTGCGTGGTGG 526655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434914773867840