Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq112 91.5 1e-13 >seq112 Length=1369157 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 6898 ATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTC 6957 ||||| ||| || || || ||||||||||| ||||| ||||| |||| ||| ||| Sbjct 972634 ATACTTCGCACCGAAATGCCTCCACTGGAAACCGTACACCGGCCCCAGGTCACCCGGACG 972693 Query 6958 CCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 ||| ||||||| || ||||||| || || || ||||| | | ||||| ||| Sbjct 972694 ACGATCGTGGAACCCAAGCCTGTCCAGGAATTCACGCGACCCATTGCCATCCCAAATCCG 972753 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTC 7077 | || || |||| ||| | || ||| || || | |||||| || || || Sbjct 972754 GATGCCTTTGGCGCTGAGCACCTCGCCGTCTGTGCAACCGCTGATGAACCAAAGGAGTTC 972813 Query 7078 CTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125 |||| | ||||| |||| |||| ||||| || ||||||| ||| || Sbjct 972814 CTCGGCAACGCCGCGCCAGAACACCCGTTTGGTTGTCAGCAACGGGAA 972861 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 || ||| ||||||| || ||||| |||| |||| ||||| | |||||| || || ||| Sbjct 972861 TTCCCGTTGCTGACAACCAAACGGGTGTTCTGGCGCGGCGTTGCCGAGGAACTCCTTTGG 972802 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 ||| | || || ||| || | ||| |||| || || | ||| ||||| Sbjct 972801 TTCATCAGCGGTTGCACAGACGGCGAGGTGCTCAGCGCCAAAGGCATCCGGATTTGGGAT 972742 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGAC 34399 | | ||||| || || || ||||||| || ||||||| ||| ||| ||| Sbjct 972741 GGCAATGGGTCGCGTGAATTCCTGGACAGGCTTGGGTTCCACGATCGTCGTCCGGGTGAC 972682 Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 |||| ||||| ||||| ||||||||||| || || || ||| ||||| Sbjct 972681 CTGGGGCCGGTGTACGGTTTCCAGTGGAGGCATTTCGGTGCGAAGTAT 972634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448258662612240