Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq334 167 5e-36 seq634 159 8e-34 seq179 149 1e-30 >seq334 Length=1041161 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || || ||||| || ||||| || || || || || |||| || || Sbjct 526637 AGAACAAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGGCTAGCGTCCGCCCGTCC 526578 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || ||||| || |||| || ||||||||| Sbjct 526577 TCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCC 526518 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||| | ||||| |||||| ||| || || ||||| || || ||| Sbjct 526517 TGGATCTTGGCCTTCACGGTCTCGATCGTGTCACCGCTGTCGACGTCGAGCGTAATGGTC 526458 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 526457 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 526426 Score = 154 bits (170), Expect = 3e-32 Identities = 170/225 (76%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| ||||| |||||||| || || ||||| |||||||| || || ||||| || Sbjct 527109 ACGAAGTCGCAGGACGAGGTGAAGCGTCGATTCTTTCTGGATGTTGTAGTCGGCAAGCGT 527050 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || ||||| ||||| || ||||| || || || ||||| || || | || Sbjct 527049 GCGCCCATCCTCGAGCTGTTTGCCGGCAAAGATGAGTCGCTGCTGGTCCGGCGGGATACC 526990 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA---GAGCTTTCAACCTC 211069 |||||||||||||| || || || | |||||||||||| ||| || || || Sbjct 526989 CTCCTTGTCCTGGATTTTCGCCTTGACAGTCTCGATGGTGTCACCAGAG---TCGACGTC 526933 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||||||||| ||||| || ||||| || || | |||||| Sbjct 526932 CAGCGTGATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 526888 Score = 154 bits (170), Expect = 3e-32 Identities = 170/225 (76%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || ||||| ||||| |||||||| |||||||| || || ||||| || Sbjct 527340 ACGAAGACGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCAAGCGT 527281 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||| || |||||||| || |||||||| || || |||||||| || || | || Sbjct 527280 GCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGGTCGGGCGGGATGCC 527221 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA---GAGCTTTCAACCTC 211069 |||||||||||||| || || || | ||||| || ||| ||| || || || Sbjct 527220 CTCCTTGTCCTGGATTTTCGCCTTGACAGTCTCGATCGTATCACCAGAG---TCGACGTC 527164 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||||||||| ||||| || ||||| || || | |||||| Sbjct 527163 CAGCGTGATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 527119 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || |||||||| || |||||||| || |||||||| || ||||| || || Sbjct 527571 ACGAAGACGAAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGT 527512 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || ||||||||||| || || ||||| || || || ||||| || || | || Sbjct 527511 GCGCCCGTCCTCCAGCTGCTTCCCCGCAAAGATCAGACGCTGCTGGTCTGGCGGGATGCC 527452 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||| ||||| || || | |||||||||||| || || || || Sbjct 527451 TTCCTTGTCCTGAATCTTCGCCTTGACAGTCTCGATGGTGTCACCAGAATCGACATCCAG 527392 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| || ||||| ||||| || || | |||||| Sbjct 527391 AGTGATGGTCTTCCCAGTGAGCGTCTTCACGAAGATCTGCAT 527350 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| ||||| || || ||||| || |||||||| || || || || || Sbjct 945237 ACGAAGGCGAAGGACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGT 945178 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || ||||||||||| || || ||||| || || |||||||| || |||| || Sbjct 945177 GCGGCCGTCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCC 945118 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || ||| ||||| ||||| || | || ||||| Sbjct 945117 CTCCTTGTCCTGGATCTTGGCCTTGACGGCCTCGATCGTGTCCGACGACGCCACATCGAG 945058 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| || || || ||||| || || | ||||| Sbjct 945057 TGTGATCGTCTTGCCGGTAAGCGTCTTGACGAATATTTGCAT 945016 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || |||||||| || || || || || ||||| || || || || || Sbjct 526878 ACGAAGACGCAGAACGAGGTGAAGCGTCGATTCCTTCTGAATGTTGTAGTCGGCGAGTGT 526819 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || ||||||||||| || ||||| || || || ||||| || || | || Sbjct 526818 GCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGCGGGATACC 526759 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || || | ||||| ||||| | || || ||||| Sbjct 526758 CTCCTTGTCCTGGATCTTCGCCTTGACCGTCTCGATCGTGTCGCCGGAGTCGACGTCGAG 526699 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || | ||||| || || | |||||| Sbjct 526698 CGTGATGGTCTTCCCGGTCAAGGTCTTCACGAAGATCTGCAT 526657 >seq634 Length=872753 Score = 159 bits (176), Expect = 8e-34 Identities = 165/215 (77%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| | || ||||| || |||||||| || || || || || | ||||| Sbjct 526670 AGGACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCATCC 526729 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || |||||||| ||||||| || ||||||||| Sbjct 526730 TCGAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCC 526789 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGT---CAGAGCTTTCAACCTCGAGAGTGATC 211079 |||||||| || ||| | ||||| |||| | ||| || || ||||| |||||| Sbjct 526790 TGGATCTTGGCCTTGACGGTCTCGATCGTGTCGCCCGAG---TCGACATCGAGCGTGATC 526846 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||| || || | |||||| Sbjct 526847 GTCTTACCCGTCAGGGTCTTCACGAAGATCTGCAT 526881 >seq179 Length=351413 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || || ||||| || |||||||| || || || ||||| | ||||| Sbjct 22467 AGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCC 22526 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || ||||| || || | || ||||| ||| Sbjct 22527 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTATCC 22586 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| | ||||| || || ||| || || || || || |||||| Sbjct 22587 TGGATCTTGGCCTTCACCGTCTCGATCGTATCGCCGCTGTCCACGTCCAGTGTAATCGTC 22646 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 22647 TTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 22678 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || || ||||| || || ||||| || ||||| || || | || || Sbjct 23622 AGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCCAGCGTGCGCCCGTCC 23681 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || || || |||||||| || | || ||||| ||| Sbjct 23682 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTATCC 23741 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| | ||||| ||||| ||| || || || || || |||||| Sbjct 23742 TGGATCTTGGCCTTCACCGTCTCGATCGTGTCGCCGCTGTCCACATCCAGCGTAATCGTC 23801 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 23802 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 23833 Score = 141 bits (156), Expect = 2e-28 Identities = 152/200 (76%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| || |||||||| || || || ||||| | ||||| |||||||||||||| Sbjct 22713 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCG 22772 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| || || |||||||| || |||| || ||||||||||| ||||| ||| Sbjct 22773 GCGAAGATCAGACGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTC 22832 Query 211038 ACGTTTTCGATGGTGTCA---GAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||||| |||||| ||| || || || || || || ||||| || || || Sbjct 22833 ACAGTTTCGATCGTGTCACCCGAG---TCGACGTCAAGCGTAATGGTCTTCCCTGTCAGC 22889 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 22890 GTCTTGACGAAGATCTGCAT 22909 Score = 141 bits (156), Expect = 2e-28 Identities = 167/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| || || || || | || ||||| || |||||||| || || || ||||| Sbjct 23150 ACGCAGTCGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGT 23209 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| |||||||||||||| |||||||| || || || ||||| || |||| || Sbjct 23210 GCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATACC 23269 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA---GAGCTTTCAACCTC 211069 || |||||||| ||||| ||||| ||||||| |||||| ||| || || || Sbjct 23270 CTCTTTGTCCTGAATCTTGGCCTTCACCGTTTCGATTGTGTCACCCGAG---TCGACGTC 23326 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || ||||| || || | |||||| Sbjct 23327 AAGCGTAATGGTCTTTCCTGTCAGCGTCTTGACGAAGATCTGCAT 23371 Score = 132 bits (146), Expect = 1e-25 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || || ||||| || |||||||| || || || ||||| | ||||| Sbjct 23391 AGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCC 23450 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || || || || || ||||| |||||||| | || ||||||||| Sbjct 23451 TCCAGCTGCTTTCCGGCAAAAATCAGACGCTGTTGATCAGGAGGGATGCCCTCCTTGTCC 23510 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGT---CAGAGCTTTCAACCTCGAGAGTGATC 211079 || ||||| ||| || | ||||| |||| | ||| || || || | ||||| Sbjct 23511 TGAATCTTGGCTTTGACCGTCTCGATCGTGTCGCCTGAG---TCGACATCCAATGTGATG 23567 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||| || || | |||||| Sbjct 23568 GTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 23602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159142093959455