Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq334 118 9e-22 seq179 100 2e-16 >seq334 Length=1041161 Score = 118 bits (130), Expect = 9e-22 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 ||||| || || || || |||||||| || || | || || ||||||||||| ||||| Sbjct 527078 TCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGCCCATCCTCGAGCTGTTTGCCGGCAAAG 527019 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || || ||||||||||| | || | | ||| |||||| ||||||| |||| ||| Sbjct 527018 ATGAGTCGCTGCTGGTCCGGCGGGATACCCTCCTTGTCCTGGATTTTCGCCTTGACAGTC 526959 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | || || | || || ||||||| |||||| | || |||||||| || || || Sbjct 526958 TCGATGGTGTCACCAGAGTCGACGTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTGACG 526899 Query 39274 AAGATTTGCATCTTT 39288 ||||| |||||| || Sbjct 526898 AAGATCTGCATCGTT 526884 Score = 113 bits (124), Expect = 4e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || || || || ||||| ||||| || | || |||||||| ||||| ||||| Sbjct 526847 TCCTTCTGAATGTTGTAGTCGGCGAGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAG 526788 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || |||||||||||||| | || | | ||| |||||| ||| ||| |||| |||| Sbjct 526787 ATCAGACGCTGCTGGTCCGGCGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACCGTC 526728 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | ||| |||| || || ||||| | |||||| | || || |||| || || || Sbjct 526727 TCGATCGTGTCGCCGGAGTCGACGTCGAGCGTGATGGTCTTCCCGGTCAAGGTCTTCACG 526668 Query 39274 AAGATTTGCATCTTT 39288 ||||| |||||| || Sbjct 526667 AAGATCTGCATCGTT 526653 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || || || || || || |||| || ||||| Sbjct 527552 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCCTCCAGCTGC 527493 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || |||||||| || |||||||||||||| | || | || || |||||| || ||| Sbjct 527492 TTCCCCGCAAAGATCAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGAATCTTC 527433 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| ||| | | || || | || || || |||| ||||| | || || || Sbjct 527432 GCCTTGACAGTCTCGATGGTGTCACCAGAATCGACATCCAGAGTGATGGTCTTCCCAGTG 527373 Query 39262 AGCGTTTTAACAAAGATTTGCATCTTTACGCC 39293 ||||| || || ||||| |||||| || |||| Sbjct 527372 AGCGTCTTCACGAAGATCTGCATCGTTCCGCC 527341 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||| ||| || || ||||| || ||||| || || || |||| |||||||| Sbjct 526628 TGCAGCGTCGACTCCTTCTGGATATTGTAGTCGGCTAGCGTCCGCCCGTCCTCAAGCTGC 526569 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || || ||||||||||||| || | | ||| |||||| ||| || Sbjct 526568 TTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGGATCTTG 526509 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 || | ||| | | ||| || | || ||||| | ||| || | || |||||| Sbjct 526508 GCCTTCACGGTCTCGATCGTGTCACCGCTGTCGACGTCGAGCGTAATGGTCTTGCCCGTC 526449 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||| ||||| Sbjct 526448 AGGGTCTTCACGAAGATCTGCAT 526426 >seq179 Length=351413 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || ||||| || || || | || || ||||| ||||| || || Sbjct 22487 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAA 22546 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || |||||||||||||| | || | || ||| || ||| ||| || || | ||| Sbjct 22547 GATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGT 22606 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | |||||||| |||||||||| || || | || ||||||||||| || || Sbjct 22607 CTCGATCGTATCGCCGCTGTCCACGTCCAGTGTAATCGTCTTGCCCGTCAGCGTCTTGAC 22666 Query 39273 AAAGATTTGCATC 39285 ||||| |||||| Sbjct 22667 GAAGATCTGCATC 22679 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| ||||| ||| || || || || || || || || || || |||| || ||||| Sbjct 23630 ATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCCAGCGTGCGCCCGTCCTCCAGCTG 23689 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||||| ||||| || |||||||||||||| | || | || ||| || ||| ||| || Sbjct 23690 CTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTATCCTGGATCTT 23749 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || | |||| | | ||| |||| ||||| |||| ||| || | || ||||| Sbjct 23750 GGCCTTCACCGTCTCGATCGTGTCGCCGCTGTCCACATCCAGCGTAATCGTCTTGCCCGT 23809 Query 39261 CAGCGTTTTAACAAAGATTTGCATC 39285 ||| || || || ||||| |||||| Sbjct 23810 CAGGGTCTTCACGAAGATCTGCATC 23834 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || ||||| || || || | || || ||||| ||||| || || Sbjct 23180 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAA 23239 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || |||||||||||||| | ||| | | |||||||||| || || || | ||| Sbjct 23240 GATCAGACGCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTGAATCTTGGCCTTCACCGT 23299 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | || || | ||| || ||||| | ||| || | ||||| |||||||| || || Sbjct 23300 TTCGATTGTGTCACCCGAGTCGACGTCAAGCGTAATGGTCTTTCCTGTCAGCGTCTTGAC 23359 Query 39273 AAAGATTTGCATC 39285 ||||| |||||| Sbjct 23360 GAAGATCTGCATC 23372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429542108196971