Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq334 170 5e-37 seq634 143 6e-29 seq179 134 3e-26 seq434 87.8 4e-12 >seq334 Length=1041161 Score = 170 bits (188), Expect = 5e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| |||||| ||||| || || |||||||| |||| ||||| ||||| | || Sbjct 527109 ACGAAGTCGCAGGACGAGGTGAAGCGTCGATTCTTTCTGGATGTTGTAGTCGGCAAGCGT 527050 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||| || ||||| || || || ||||| ||||| || ||||| ||||| ||||| Sbjct 527049 GCGCCCATCCTCGAGCTGTTTGCCGGCAAAGATGAGTCGCTGCTGGTCCGGCGGGATACC 526990 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| ||||| || ||| |||| ||||||||||| | || ||||| | Sbjct 526989 CTCCTTGTCCTGGATTTTCGCCTTGACAGTCTCGATGGTGTCACCAGAGTCGACGTCCAG 526930 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||||||||| || || | ||| | ||||| Sbjct 526929 CGTGATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 526888 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| |||||||| || || || || || |||| |||||| ||||| | || Sbjct 526647 ACGGAGACGCAGAACAAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGGCTAGCGT 526588 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||| || || |||||||| || |||||||| || || || ||||||||||||||||| Sbjct 526587 CCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGAATACC 526528 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| |||||| | ||||| ||||| | | || ||||| | Sbjct 526527 CTCCTTGTCCTGGATCTTGGCCTTCACGGTCTCGATCGTGTCACCGCTGTCGACGTCGAG 526468 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || ||||||||||||| || || | ||| | ||||| Sbjct 526467 CGTAATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 526426 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||| || ||||| ||||| || ||||| |||| ||||| ||||| | || Sbjct 527340 ACGAAGACGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCAAGCGT 527281 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||||||||| || || |||||||||||||| || || Sbjct 527280 GCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGGTCGGGCGGGATGCC 527221 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| ||||| || ||| |||| ||||| || || | || ||||| | Sbjct 527220 CTCCTTGTCCTGGATTTTCGCCTTGACAGTCTCGATCGTATCACCAGAGTCGACGTCCAG 527161 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||||||||| || || | ||| | ||||| Sbjct 527160 CGTGATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 527119 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| ||||| || || || || || |||| ||||| ||||||| || Sbjct 945237 ACGAAGGCGAAGGACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGT 945178 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||| ||||| || || |||||||| |||||||| || Sbjct 945177 GCGGCCGTCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCC 945118 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| || || ||||| ||||| || | |||| || | Sbjct 945117 CTCCTTGTCCTGGATCTTGGCCTTGACGGCCTCGATCGTGTCCGACGACGCCACATCGAG 945058 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||| || | || || | ||| | |||||| Sbjct 945057 TGTGATCGTCTTGCCGGTAAGCGTCTTGACGAATATTTGCAT 945016 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || ||||||||||| ||||| || || |||| ||||| || || | || Sbjct 527571 ACGAAGACGAAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGT 527512 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||| || || ||||||||||| || ||||| || || || ||||| ||||| || || Sbjct 527511 GCGCCCGTCCTCCAGCTGCTTCCCCGCAAAGATCAGACGCTGCTGGTCTGGCGGGATGCC 527452 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || ||||| ||| |||| ||||||||||| | || || || | Sbjct 527451 TTCCTTGTCCTGAATCTTCGCCTTGACAGTCTCGATGGTGTCACCAGAATCGACATCCAG 527392 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | || || | ||| | ||||| Sbjct 527391 AGTGATGGTCTTCCCAGTGAGCGTCTTCACGAAGATCTGCAT 527350 >seq634 Length=872753 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| | || || || || |||| ||||| ||||| | || | |||||| Sbjct 526670 AGGACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCATCC 526729 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || |||||||| || |||||||| |||||||| Sbjct 526730 TCGAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCC 526789 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || | ||||| ||||| | || || || | |||||||||| Sbjct 526790 TGGATCTTGGCCTTGACGGTCTCGATCGTGTCGCCCGAGTCGACATCGAGCGTGATCGTC 526849 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||||| || || | ||| | ||||| Sbjct 526850 TTACCCGTCAGGGTCTTCACGAAGATCTGCAT 526881 >seq179 Length=351413 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| || || || || || || || |||| ||||| ||||| | || Sbjct 22457 ACGCAGACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGT 22516 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || |||||||| || || || ||||| ||||| || || Sbjct 22517 GCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCC 22576 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || |||||||| |||||| | ||||| || || | | |||||||| | Sbjct 22577 CTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTATCGCCGCTGTCCACGTCCAG 22636 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || |||||||||||||||| || || | ||| | ||||| Sbjct 22637 TGTAATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 22678 Score = 132 bits (146), Expect = 1e-25 Identities = 165/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| | ||| || || || || || |||| |||||||||||||| || Sbjct 22919 ACGCAGACGCAGGACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGT 22978 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || | |||||| || |||||||| || || ||||| || || || ||||| Sbjct 22979 TCGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGTTGATCAGGAGGGATACC 23038 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT---CTGAGGTTTCCACGTC 225668 ||||| || || ||||| |||||| | ||||| |||| ||||| || || || Sbjct 23039 CTCCTTATCCTGAATCTTGGCCTTCACCGTCTCGATCGTGTCGCCTGAG---TCGACATC 23095 Query 225669 TAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| ||||| || |||| || || | ||| | ||||| Sbjct 23096 CAATGTGATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCAT 23140 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| || || || || || || || || | ||||| || |||| || Sbjct 23612 ACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCCAGCGT 23671 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||| || || |||||||| || || ||||| || || || ||||| ||||| || || Sbjct 23672 GCGCCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCC 23731 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || |||||||| |||||| | ||||| ||||| | | ||||| || | Sbjct 23732 CTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTGTCGCCGCTGTCCACATCCAG 23791 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| |||||||||||||||| || || | ||| | ||||| Sbjct 23792 CGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 23833 Score = 105 bits (116), Expect = 2e-17 Identities = 159/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| || || || || || || || |||| ||||| ||||| | || Sbjct 23381 ACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGT 23440 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || || || || || || ||||| || || || || || Sbjct 23441 GCGACCATCCTCCAGCTGCTTTCCGGCAAAAATCAGACGCTGTTGATCAGGAGGGATGCC 23500 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC---TGAGGTTTCCACGTC 225668 |||||||| || ||||| || || | ||||| ||||| |||| || || || Sbjct 23501 CTCCTTGTCCTGAATCTTGGCTTTGACCGTCTCGATCGTGTCGCCTGAG---TCGACATC 23557 Query 225669 TAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| ||||||||||| | || || | ||| | ||||| Sbjct 23558 CAATGTGATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 23602 >seq434 Length=93640 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 4490 TAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCTTGTGTTTCGACAACAG 4549 |||| ||||||||||| || |||||||| |||||||| || ||||||||||| | | || Sbjct 43411 TAGAAATAACATTTGTTGGAATATAAGCTGAAACATCTCCAGCTTGTGTTTCTATTATAG 43470 Query 4550 GTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATTT 4587 | | || |||| ||||||| | ||| | | ||||||| Sbjct 43471 GAAGCGCGGTTAATGATCCAGCCCCATAGTCTTTATTT 43508 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/103 (81%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 7762 ATTAAACCACATACTCCACCGCTTATACA-ATCTTCCGTCAGTTTCTTTGAGTTTTAACC 7820 |||||||||||| |||||||||| | | ||| |||||| || |||| ||||| || | Sbjct 32892 ATTAAACCACATGTTCCACCGCTTGTTTAGATC-CCCGTCAATTCCTTTAAGTTTCAATC 32834 Query 7821 TTGCGGTCGTAGTACTCAGGTGGAATATTT-ACGCGTTAGCTT 7862 ||||| | ||| | | |||| ||||||||| |||||||||||| Sbjct 32833 TTGCGATTGTACTCCCCAGGCGGAATATTTGACGCGTTAGCTT 32791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192521008702898