Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq334 165 6e-36 seq179 161 7e-35 seq634 147 2e-30 >seq334 Length=1041161 Score = 165 bits (182), Expect = 6e-36 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| |||||| ||||||||||| || ||||| |||| |||| ||| Sbjct 527558 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCCTCC 527499 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||||||||| |||||||||| ||||||||| |||| || | |||||||| ||| Sbjct 527498 AGCTGCTTCCCCGCAAAGATCAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGA 527439 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||| | || | |||||||| | || || || |||| || || ||||| Sbjct 527438 ATCTTCGCCTTGACAGTCTCGATGGTGTCACCAGAATCGACATCCAGAGTGATGGTCTTC 527379 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| |||||||||||||| ||||| Sbjct 527378 CCAGTGAGCGTCTTCACGAAGATCTGCAT 527350 Score = 149 bits (164), Expect = 5e-31 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44106 TCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAAT 44165 || |||| || | || | || || ||||||||||| ||||| || |||||||| | Sbjct 526888 TCGTTCCACCACGAAGACGCAGAACGAGGTGAAGCGTCGATTCCTTCTGAATGTTGTAGT 526829 Query 44166 CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 |||||||| ||| | || || |||||||| || |||||||||| ||||||||| || | Sbjct 526828 CGGCGAGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCG 526769 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 || | ||| ||||| ||| |||||| ||| | || | || |||||| |||| | Sbjct 526768 GCGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACCGTCTCGATCGTGTCGCCGGAGT 526709 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | ||| || ||||| || || | ||||||||||||||| ||||| Sbjct 526708 CGACGTCGAGCGTGATGGTCTTCCCGGTCAAGGTCTTCACGAAGATCTGCAT 526657 Score = 141 bits (156), Expect = 7e-29 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 44106 TCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAAT 44165 || |||| || | || | || || ||||| ||||| |||||| ||||| ||||| | Sbjct 526657 TCGTTCCACCACGGAGACGCAGAACAAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGT 526598 Query 44166 CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 |||| || ||| |||| || |||||||| ||||| ||||||| |||||||| || | Sbjct 526597 CGGCTAGCGTCCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGG 526538 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 || | ||| ||||| ||| ||||| ||||| || | || ||||| || | Sbjct 526537 GCGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACGGTCTCGATCGTGTCACCGCTGT 526478 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || | |||||| ||||| ||||| ||||||||||||||||| |||||| Sbjct 526477 CGACGTCGAGCGTAATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 526425 Score = 141 bits (156), Expect = 7e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 |||| || || ||||||||||| || || ||||||||||| ||||| || |||| Sbjct 527105 AGTCGCAGGACGAGGTGAAGCGTCGATTCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGC 527046 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || || ||||| || ||||||||||| | |||||||| || | || | ||| ||| Sbjct 527045 CCATCCTCGAGCTGTTTGCCGGCAAAGATGAGTCGCTGCTGGTCCGGCGGGATACCCTCC 526986 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| || ||| ||| | || | |||||||| | || || || |||| ||| Sbjct 526985 TTGTCCTGGATTTTCGCCTTGACAGTCTCGATGGTGTCACCAGAGTCGACGTCCAGCGTG 526926 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| ||||| |||||||| |||||||| ||||| Sbjct 526925 ATCGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 526888 Score = 132 bits (146), Expect = 3e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 44106 TCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAAT 44165 || |||| || | || | || ||||||||| || || ||| || ||||||||||| | Sbjct 527350 TCGTTCCGCCACGAAGACGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGT 527291 Query 44166 CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 |||| || ||| | || || |||||||| || || ||||||| |||||| || || | Sbjct 527290 CGGCAAGCGTGCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGGTCGG 527231 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 || | || ||||| ||| || ||| ||| | || | || || || | || | Sbjct 527230 GCGGGATGCCCTCCTTGTCCTGGATTTTCGCCTTGACAGTCTCGATCGTATCACCAGAGT 527171 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || |||| ||| |||||||| ||||| ||||||||||||||||| |||||| Sbjct 527170 CGACGTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 527118 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| ||||| |||||| ||||||||||| ||||| || ||| |||| ||| Sbjct 945224 ACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCC 945165 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||||| |||||| || || | || | || ||||| ||| Sbjct 945164 AGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGG 945105 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | || ||||| | || |||| || | || |||||||| Sbjct 945104 ATCTTGGCCTTGACGGCCTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTG 945045 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| ||||| |||||||| Sbjct 945044 CCGGTAAGCGTCTTGACGAATATTTGCAT 945016 >seq179 Length=351413 Score = 161 bits (178), Expect = 7e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || || || || ||||| |||||| || |||||||| || || Sbjct 23607 CCGCCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCC 23666 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| |||| ||||||||||| ||||||||||||| ||||||||| || | || Sbjct 23667 AGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGG 23726 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || ||||| ||| ||||| ||||| || | || |||||| || ||||| Sbjct 23727 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTGTCGCCGCTGTCCACA 23786 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| |||||||||||| ||||| ||||||||||||||||| ||||| Sbjct 23787 TCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 23833 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||||| || || || || | ||| |||||| ||||||||||| |||||| Sbjct 23145 CCGCCACGCAGTCGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCG 23204 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| ||||| ||||||| ||||||||| || | || Sbjct 23205 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGA 23264 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | ||| || || ||| ||||| ||||| ||| | || ||||| | || || || Sbjct 23265 ATACCCTCTTTGTCCTGAATCTTGGCCTTCACCGTTTCGATTGTGTCACCCGAGTCGACG 23324 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | |||||| |||||||| || || ||||| |||||||| ||||| Sbjct 23325 TCAAGCGTAATGGTCTTTCCTGTCAGCGTCTTGACGAAGATCTGCAT 23371 Score = 140 bits (154), Expect = 2e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| ||||||||||| |||||||| ||| | || ||||||||||| ||||| || Sbjct 22487 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAA 22546 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||||| ||||||||| || | || | || ||||| ||| ||||| ||||| || Sbjct 22547 GATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGT 22606 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || || ||| || ||||| |||| ||||||||||| ||||| || ||||| || Sbjct 22607 CTCGATCGTATCGCCGCTGTCCACGTCCAGTGTAATCGTCTTGCCCGTCAGCGTCTTGAC 22666 Query 44326 GAAGATTTGCAT 44337 |||||| ||||| Sbjct 22667 GAAGATCTGCAT 22678 Score = 138 bits (152), Expect = 8e-28 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || |||| |||||| || |||||| ||||||||||||||||| Sbjct 22914 CCACCACGCAGACGCAGGACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGGCC 22973 Query 44171 A--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 | ||| || | || |||| |||||| ||||| ||||||| |||||| ||||| | || Sbjct 22974 AAGGTT--CGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGTTGATCAGGAG 23031 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | | ||| ||||| ||| ||||| ||||| || | || |||||| | || || | Sbjct 23032 GGATACCCTCCTTATCCTGAATCTTGGCCTTCACCGTCTCGATCGTGTCGCCTGAGTCGA 23091 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||| || || ||||| || || || ||||| |||||||| ||||| Sbjct 23092 CATCCAATGTGATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCAT 23140 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| ||||||||||| |||||||| ||| | || ||||||||||| ||||| || Sbjct 22718 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAA 22777 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||||| |||||| || || | || | ||| ||||| ||| ||||| ||||| || Sbjct 22778 GATCAGACGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTCACAGT 22837 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || ||||| | || || || || | |||||| ||||| || || || ||||| || Sbjct 22838 TTCGATCGTGTCACCCGAGTCGACGTCAAGCGTAATGGTCTTCCCTGTCAGCGTCTTGAC 22897 Query 44326 GAAGATTTGCAT 44337 |||||| ||||| Sbjct 22898 GAAGATCTGCAT 22909 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || || || || ||||| |||||| ||||||||||| |||||| Sbjct 23376 CCACCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 23435 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| |||||||| |||| |||||| ||||| | ||| Sbjct 23436 AGGGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAAATCAGACGCTGTTGATCAGGAGGG 23495 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || ||||| ||| ||||| || | || | || |||||| | || || || Sbjct 23496 ATGCCCTCCTTGTCCTGAATCTTGGCTTTGACCGTCTCGATCGTGTCGCCTGAGTCGACA 23555 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || ||||| ||||| || ||||| |||||||| ||||| Sbjct 23556 TCCAATGTGATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 23602 >seq634 Length=872753 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| | ||| |||||| ||||||||||| |||||||| |||| | || || Sbjct 526673 ACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCATCCTCG 526732 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||||| |||||| || || | ||| | ||| ||||| ||| Sbjct 526733 AGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGG 526792 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | || | || |||||| | || || || || | ||| |||||||| Sbjct 526793 ATCTTGGCCTTGACGGTCTCGATCGTGTCGCCCGAGTCGACATCGAGCGTGATCGTCTTA 526852 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||||||||||||||| ||||| Sbjct 526853 CCCGTCAGGGTCTTCACGAAGATCTGCAT 526881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359987473615539