Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq334 150 4e-31 seq179 138 3e-27 seq634 134 3e-26 >seq334 Length=1041161 Score = 150 bits (166), Expect = 4e-31 Identities = 165/218 (76%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || || || || |||||||| || || || || ||| | Sbjct 526891 CAGATCTTCGTCAAGACCCTGACGGGCAAGACGATCACGCTGGACGTCGA---CTCTGGT 526947 Query 177982 -ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||||||| ||||| || || |||||||| || || ||||| ||||||||| Sbjct 526948 GACACCATCGAGACTGTCAAGGCGAAAATCCAGGACAAGGAGGGTATCCCGCCGGACCAG 527007 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || ||||| ||||| ||||| ||||||||||| ||||| | || |||||||| || ||| Sbjct 527008 CAGCGACTCATCTTTGCCGGCAAACAGCTCGAGGATGGGCGCACGCTTGCCGACTACAAC 527067 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||| |||||||| || || || || || || |||| Sbjct 527068 ATCCAGAAAGAATCGACGCTTCACCTCGTCCTGCGACT 527105 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || || || ||||| || || ||| ||| Sbjct 526429 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATTACGCTCGACGTCGACAGCGGTGAC 526488 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||| ||| || ||||| |||||||| || || || || || |||||||| Sbjct 526489 ACGATCGAGACCGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCGCCCGACCAGCAG 526548 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || |||| || ||||| || || || Sbjct 526549 CGCCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGGCGGACGCTAGCCGACTACAATATC 526608 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || || ||||| |||||| || | ||| Sbjct 526609 CAGAAGGAGTCGACGCTGCACCTTGTTCTGCGTCTC 526644 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || || ||||| || || || || ||| Sbjct 527353 CAGATCTTCGTGAAGACGCTCACTGGGAAGACCATCACTCTGGATGTCGATTCTGGTGAC 527412 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||| ||||| |||||||||||||| ||||| ||||| || |||||||| Sbjct 527413 ACCATCGAGACTGTCAAGGCGAAGATTCAGGACAAGGAAGGCATCCCGCCAGACCAGCAG 527472 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || || || | || || || || || ||| || Sbjct 527473 CGTCTGATCTTTGCGGGGAAGCAGCTGGAGGACGGGCGCACGCTCGCGGACTACAACATC 527532 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || || |||||| Sbjct 527533 CAGAAGGAGTCCACCCTCCACCTTGTT 527559 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || || ||||| ||||| || || | ||| Sbjct 526660 CAGATCTTCGTGAAGACCTTGACCGGGAAGACCATCACGCTCGACGTCGACTCCGGCGAC 526719 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||| ||||| ||||| |||||||| || || ||||| ||||||||||| Sbjct 526720 ACGATCGAGACGGTCAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCGGACCAGCAG 526779 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || ||||| | || || ||||| || ||| | Sbjct 526780 CGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACACTCGCCGACTACAACATT 526839 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || ||||| || || || || ||| || Sbjct 526840 CAGAAGGAATCGACGCTTCACCTCGTTCTG 526869 >seq179 Length=351413 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || ||||| || || || ||||| ||| || Sbjct 22675 CAGATCTTCGTCAAGACGCTGACGGGCAAGACGATTACACTGGACGTGGACAGCGGCGAT 22616 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||| || || ||||| ||||| || || || ||||| ||||||||||| Sbjct 22615 ACGATCGAGACGGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCGGACCAGCAG 22556 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || ||||| | || || ||||| || ||| || Sbjct 22555 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAACATC 22496 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||||||||| || Sbjct 22495 CAGAAGGAGTCGACACTGCATCTCGT 22470 Score = 132 bits (146), Expect = 1e-25 Identities = 161/218 (74%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || |||||||| || || || || || || || ||| | Sbjct 23368 CAGATCTTCGTCAAGACGCTGACAGGAAAGACCATTACGCTTGACGTCGA---CTCGGGT 23312 Query 177982 -ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||| ||||| | || || ||||||||||||||||| || || || ||||||||| Sbjct 23311 GACACAATCGAAACGGTGAAGGCCAAGATTCAGGACAAAGAGGGTATTCCCCCGGACCAG 23252 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || ||||||||||| || ||||| || ||||| | || || ||||| || ||| Sbjct 23251 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTCGCCGACTACAAC 23192 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||| || || || || ||||||| ||| || |||| Sbjct 23191 ATCCAGAAGGAGTCGACGTTGCATCTCGTTCTGCGACT 23154 Score = 125 bits (138), Expect = 2e-23 Identities = 154/209 (74%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || || || || || ||||| | || || || ||||| Sbjct 23599 CAGATCTTCGTCAAGACGCTTACGGGCAAGACCATCACATTGGATGTCGA---CTCAGGC 23543 Query 177982 -ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||| ||||||| |||||| |||||||||||||| || || |||||||| || || Sbjct 23542 GACACGATCGAGACGGTCAAAGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAA 23483 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || || || |||||||| ||||| || ||||| | || || ||||| || ||| Sbjct 23482 CAGCGTCTGATTTTTGCCGGAAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAAC 23423 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || |||||||| || Sbjct 23422 ATCCAGAAGGAGTCGACGCTGCATCTCGT 23394 Score = 114 bits (126), Expect = 3e-20 Identities = 154/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || ||||| || || || || || || || || ||| | Sbjct 22906 CAGATCTTCGTCAAGACGCTGACAGGGAAGACCATTACGCTTGACGTCGA---CTCGGGT 22850 Query 177982 -ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||| ||||| | || || |||||||||||||| || || || || |||||||| Sbjct 22849 GACACGATCGAAACTGTGAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAA 22790 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || ||||||||||| || ||||| || ||||| | || || ||||| || ||| Sbjct 22789 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAAC 22730 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 |||| || || || || ||||||| ||| || Sbjct 22729 ATCCAGAAGGAGTCGACGTTGCATCTCGTTCTG 22697 Score = 111 bits (122), Expect = 4e-19 Identities = 151/208 (73%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || ||||| || || ||||| | || || || ||||| Sbjct 23137 CAGATCTTCGTCAAGACGCTGACAGGGAAGACCATCACATTGGATGTCGA---CTCAGGC 23081 Query 177982 -ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||| ||||||| || || ||||||||||| || || || |||||||| || || Sbjct 23080 GACACGATCGAGACGGTGAAGGCCAAGATTCAGGATAAGGAGGGTATCCCTCCTGATCAA 23021 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || ||||||||||| || ||| | || ||||| | || | |||||||| ||| Sbjct 23020 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGCCGAACCTTGGCCGATTACAAC 22961 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || || ||||| || |||| Sbjct 22960 ATCCAGAAGGAGTCGACACTTCA-CTTG 22934 >seq634 Length=872753 Score = 134 bits (148), Expect = 3e-26 Identities = 156/209 (75%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || |||||||| ||||| || || ||| | Sbjct 526878 CAGATCTTCGTGAAGACCCTGACGGGTAAGACGATCACGCTCGATGTCGA---CTCGGGC 526822 Query 177982 -ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||| ||||||| |||||| ||||| |||||||| || || || ||||||||||| Sbjct 526821 GACACGATCGAGACCGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAA 526762 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || |||||||| || || |||||||| ||||| | || || ||||| || ||| Sbjct 526761 CAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGGCGCACGCTCGCCGACTACAAC 526702 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || |||| || || Sbjct 526701 ATCCAGAAGGAGTCGACGTTGCACCTCGT 526673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203720912988398