Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F002093825.1_202017-04- 14] 667 sequences; 24,831,078 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq634 170 2e-37 seq179 167 2e-36 seq334 156 4e-33 >seq634 Length=872753 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || |||| ||| ||||||||| ||||| ||||||| | Sbjct 526655 CCACCACGCAGACGGAGGACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCG 526714 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || |||||| | || |||||||||||||| ||||| ||||| ||||||||||||| ||| Sbjct 526715 AGCGTGCGCCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCCGGAGGA 526774 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||||| ||| || ||| | | | | ||||||| ||| || || Sbjct 526775 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGGTCTCGATCGTGTCGCCCGAGTCGACA 526834 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| ||||| ||||||||||| ||||| ||||| |||||||| Sbjct 526835 TCGAGCGTGATCGTCTTACCCGTCAGGGTCTTCACGAAGATCTGCAT 526881 >seq179 Length=351413 Score = 167 bits (184), Expect = 2e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || ||||||||||| ||||||||||||||| ||||| | Sbjct 23607 CCGCCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCC 23666 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || |||||| |||| || |||||||||||||| || ||||| ||||| ||||| | || Sbjct 23667 AGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGG 23726 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||| ||| ||| || ||||| || | | ||||||| ||||| Sbjct 23727 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTGTCGCCGCTGTCCACA 23786 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||| ||||| || |||||||| ||||| ||||| |||||||| Sbjct 23787 TCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 23833 Score = 165 bits (182), Expect = 8e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||||| ||| ||||||||| ||||| ||||||| | Sbjct 22683 CCACCACGCAGACGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCG 22742 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||||||||| ||||| ||||||||||||| |||| Sbjct 22743 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGA 22802 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || | ||||| | | ||||| | ||| || || Sbjct 22803 ATACCCTCCTTGTCC-TGAATCTTGGCCTTCACAGTTTCGATCGTGTCACCCGAGTCGAC 22861 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| || || || || ||||||||||| ||||| |||||||| Sbjct 22862 GTCAAGCGTAATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCAT 22909 Score = 161 bits (178), Expect = 9e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || |||||||| || ||||||||| ||||| ||||||| | Sbjct 22452 CCACCACGCAGACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCG 22511 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||||||||| ||||| ||||| ||||||| || Sbjct 22512 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGG 22571 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||| ||| ||| || ||||| || | | || |||| ||||| Sbjct 22572 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTATCGCCGCTGTCCACG 22631 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || ||||| || |||||||||||||| ||||| |||||||| Sbjct 22632 TCCAGTGTAATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 22678 Score = 161 bits (178), Expect = 9e-35 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || || | || ||||||| ||| ||||||||| ||||| ||||||| | Sbjct 23145 CCGCCACGCAGTCGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCG 23204 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||||||||| ||||| ||||| ||||||| |||| Sbjct 23205 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGA 23264 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | ||| |||||| ||| | || | ||||| || | ||||| | ||| || || Sbjct 23265 ATACCCTCTTTGTCC-TGAATCTTGGCCTTCACCGTTTCGATTGTGTCACCCGAGTCGAC 23323 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| || || || || ||||||||||| ||||| |||||||| Sbjct 23324 GTCAAGCGTAATGGTCTTTCCTGTCAGCGTCTTGACGAAGATCTGCAT 23371 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||||||||| ||||||||| ||||| ||||||| | Sbjct 23376 CCACCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 23435 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||| ||||| || ||||| |||||||| || | || Sbjct 23436 AGGGTGCGACCATCCTCCAGCTGCTTTCCGGCAAAAATCAGACGCTGTTGATCAGGAGGG 23495 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGC-TTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| | || || || | || | | ||||||| || || || Sbjct 23496 ATGCCCTCCTTGTCC-TGAATCTTGGCTTTGACCGTCTCGATCGTGTCGCCTGAGTCGAC 23554 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || ||||| |||||||| ||||| |||||||| Sbjct 23555 ATCCAATGTGATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 23602 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||| ||||| || |||| Sbjct 22914 CCACCACGCAGACGCAGGACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGGCC 22973 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || || | ||||||||||||||| ||||| |||||||| || | || Sbjct 22974 AAGGTTCGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGTTGATCAGGAGGG 23033 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| | || | ||||| || | | ||||||| || || || Sbjct 23034 ATACCCTCCTTATCC-TGAATCTTGGCCTTCACCGTCTCGATCGTGTCGCCTGAGTCGAC 23092 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || ||||||||||| ||||| |||||||| Sbjct 23093 ATCCAATGTGATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCAT 23140 >seq334 Length=1041161 Score = 156 bits (172), Expect = 4e-33 Identities = 175/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||||| ||||| || ||| ||||| ||||| ||||||| Sbjct 527345 CCGCCACGAAGACGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCA 527286 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || ||||||||||| || ||||| ||||| ||||||||||| | || Sbjct 527285 AGCGTGCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGGTCGGGCGGG 527226 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||||||| |||||| ||| | | | | || || | || || || Sbjct 527225 ATGCCCTCCTTGTCCTGGATTTTCGCCTTGACAGTCTCGATCGTATCACCAGAGTCGACG 527166 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCG 41869 |||| ||| ||||| || |||||||| ||||| ||||| ||||||||| || || Sbjct 527165 TCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGGTACCG 527112 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || |||||||| ||||||||| || || ||||||| Sbjct 526652 CCACCACGGAGACGCAGAACAAGGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCGGCT 526593 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || ||| |||| || ||||||||||||||||| ||||||||||| ||||| | ||| Sbjct 526592 AGCGTCCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGA 526533 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||||| ||| || ||||| | | | ||||| | || || Sbjct 526532 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACGGTCTCGATCGTGTCACCGCTGTCGACG 526473 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | ||| || || || |||||||| ||||| ||||| ||||||||| Sbjct 526472 TCGAGCGTAATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 526425 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || || || | || || |||||||| ||||||||| ||||| ||||| Sbjct 945246 ACCACCACCACGAAGGCGAAGGACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 945187 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || ||||| |||| || |||||||| || || || ||||| ||||||||||||| Sbjct 945186 GGCCAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGG 945127 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 |||| || |||||||||| ||| || ||| | | | | ||||| |||| | Sbjct 945126 CGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGGCCTCGATCGTGTCCGACGACGC 945067 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| || | || ||||| || || || |||||||| ||||| || ||||| Sbjct 945066 CACATCGAGTGTGATCGTCTTGCCGGTAAGCGTCTTGACGAATATTTGCAT 945016 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || ||||| |||||||||||||| ||||||| | Sbjct 526883 CCACCACGAAGACGCAGAACGAGGTGAAGCGTCGATTCCTTCTGAATGTTGTAGTCGGCG 526824 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||||||||| || || ||||| ||||| ||||||| || Sbjct 526823 AGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGCGGG 526764 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||||| ||| || ||| | || | | ||||||| || || || Sbjct 526763 ATACCCTCCTTGTCCTGGATCTTCGCCTTGACCGTCTCGATCGTGTCGCCGGAGTCGACG 526704 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| || || || || |||| ||||| ||||| |||||||| Sbjct 526703 TCGAGCGTGATGGTCTTCCCGGTCAAGGTCTTCACGAAGATCTGCAT 526657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462300145540400