Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq963 134 3e-26 seq147 118 2e-21 seq1979 89.7 1e-12 seq242 84.2 5e-11 >seq963 Length=27641 Score = 134 bits (148), Expect = 3e-26 Identities = 318/473 (67%), Gaps = 8/473 (2%) Strand=Plus/Minus Query 230169 ATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAG 230228 ||| ||||| |||||||| ||||| | | || ||||| ||| | || ||||| Sbjct 17411 ATCCTTTGCAGAGCGTCTGGTCGCGTTTGCCGCAGTCGAAGGAATTTTTTTCTCCGGCTC 17352 Query 230229 TTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTC--GGTCTGTCT 230286 ||||||||| ||||||||||| ||| || | |||||||| ||| | || | Sbjct 17351 TTTCTGCGCAATCTTTTGGCTCAAGAAGCGCGGGCTCATGCCTGGACTCACGTTCAGC-- 17294 Query 230287 AACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTAT-GTATTC 230345 || ||| | || || ||||||||||| || | || | || || | | ||| Sbjct 17293 AATGAGCTGATTTCGCGAGACGAGGGTCTGCACTGCGACTTTG-CGTGCCTCTTGTACAG 17235 Query 230346 AAAGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGA 230405 | | || | | ||||| || ||| ||||| | ||||| || || |||| Sbjct 17234 CATGTGCCCGCAGAAGCTGCCGAACGAAACGGTGCTCAACATCATCACGAGCGCTGTTGC 17175 Query 230406 AAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATTGGCATGAACGCTG 230464 ||| ||||| || ||| |||||| | || || || ||| || || |||||| | Sbjct 17174 GTGCGAGAAGGAATTTATTATTGACGCGCTGCCGTG-CGACTTGATCGGGATGAACAGCG 17116 Query 230465 AACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACG 230524 ||||||||| || || || || || || ||||||||| | | | || || ||| Sbjct 17115 AACTTATGGCGCAATATATTGAGTTTGTCGCCGACCGCCTGCTCCAGTCCCTCGGGCACG 17056 Query 230525 AGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGA 230584 | ||||| ||| || | ||||| |||| | |||||||| |||||||| |||||| Sbjct 17055 AAAAAGTTTACCACGCCCGCAACCCGTTTGACTGGATGGAGCTGATTTCGCTCGAAGGGA 16996 Query 230585 AGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 |||||||||| || || |||||||| | || || || | | | ||||||||| Sbjct 16995 AGACCAACTTTTTTGAGAAGCGTGTGGGAGAGTACCAAAAGGCCGGTGTGATG 16943 >seq147 Length=5172 Score = 118 bits (130), Expect = 2e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| || || | | || ||||| ||||| ||||||||||| ||| ||||||| Sbjct 2985 CTCCTTGTCATCGCCATACTCGTACCGCCACTGGATGTACTGGTTGGGCGTCTTGTCAAG 3044 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 ||| ||| ||||| ||||| || |||||||| || || || | ||| || ||||| Sbjct 3045 ATGCATCTCAATGTGATGGAACGCGTGCTGTGCGACATATGCGACACGTGCGTTCGGATG 3104 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| ||| |||| || || ||| | | |||||| || | ||| |||| || Sbjct 3105 CTTCCACACATTACCAATCTGGGGTTCAACCTCTCCCGTCAGTAGCTTGATGATCGTCGA 3164 Query 319170 TTTCCCCGCACCGTT 319184 ||| ||||| ||||| Sbjct 3165 TTTACCCGCTCCGTT 3179 >seq1979 Length=27909 Score = 89.7 bits (98), Expect = 1e-12 Identities = 57/61 (93%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGT-AGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||| | |||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 8382 TGCCTGCCTAGCTCAGTTGGTCAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 8323 Query 165768 G 165768 | Sbjct 8322 G 8322 >seq242 Length=13759 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 ||||||||| |||||||||||||||| |||||||||||| || ||||||||||||| Sbjct 5153 TAGCTCAGTTGGTAGAGCGCCAGACTCTTAATCTGGTGGCCGAGGGTTCGAGCCCC 5098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057783150142820