Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq963 127 2e-24 >seq963 Length=27641 Score = 127 bits (140), Expect = 2e-24 Identities = 299/450 (66%), Gaps = 5/450 (1%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || || || ||||| || | |||||||||| || || || || || || Sbjct 17244 AGGCACGCAAAGTCGCAGTGCAGACCCTCGTCTCGCGAAATCAGCTCATTGCTGAACGTG 17303 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | || ||||| || || ||||| | |||||| || ||| ||| || || || || Sbjct 17304 AGTCCAGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATTGCGCAGAAAGAGCCGGAGAAA 17363 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || || || ||||| | |||||||||| | || || || | | |||| | | Sbjct 17364 AAAATTCCTTCGACTGCGGCAAACGCGACCAGACGCTCTGCAAAGGATGCGT----GCGA 17419 Query 17141 CGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC 17199 || ||||| || |||||||||| |||| ||| | ||| ||| ||| || || Sbjct 17420 TGAGATCCACGTCAAAGCCCACTCGGCCTTTTTCTTCACGCAGGGAATCTCTTCCATAGC 17479 Query 17200 CTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTA 17259 | || | | | ||||||| | ||||| | ||||| || ||||| | | ||| Sbjct 17480 GTGGAAGAGATGGTTCTTTTCCTCTGGGTCGGACACGTACGTGTCAATGAGCAAGGAGTA 17539 Query 17260 CATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGC 17319 | |||| ||||| ||||||||||| || ||||| || || |||||||| || ||||||| Sbjct 17540 CGTTTCCGAGTGGATGTTCTCCATCGCGATCTGGAAGCCATAAAAGCAGCGCGCTTCCGG 17599 Query 17320 TATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGC 17379 || || || ||| |||| || || | ||| || ||||| ||||| || Sbjct 17600 GATCTGGACGTCCTTCGAGAAGCGCTCGCACAAATTCTCCAGAACGATTCCGTCCGATGC 17659 Query 17380 GGCGAAAAACGCCAATATATGCTTAATGAA 17409 |||||| || || | | |||||| ||||| Sbjct 17660 GGCGAAGAAGGCGAGCACATGCTTGATGAA 17689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517526101469520