Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq963 138 1e-27 seq1059 129 7e-25 >seq963 Length=27641 Score = 138 bits (152), Expect = 1e-27 Identities = 303/447 (68%), Gaps = 8/447 (2%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || |||||||| ||||||||||||| ||| | || ||| ||||||||| Sbjct 17247 CACGCAAAGTCGCAGTGCAGACCCTCGTCTCGCGAAATCAGCTCATTGCTGAACGTGAGT 17306 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 || ||||| || || ||||| || |||||||| || | |||| || || || || || || Sbjct 17307 CCAGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATTG-CGCAGAAAGAGCCGGAGAAAAA 17365 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATG-TA 24312 ||||||||| ||||| ||||| || | || | ||| || | ||| || ||| | Sbjct 17366 AATTCCTTCGACTGCGGCAAACGCGACCAGACGCTCTGCAAAGGATGCG-TGCGATGAGA 17424 Query 24313 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 24372 ||||| | |||||| |||||||| || || || || || || || ||||| | | Sbjct 17425 TCCACGTCAAAGCCCACTCGGCCTTTTTCTTCACGCAGGGAATCTCTTCCATAGCGTGGA 17484 Query 24373 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATACAT 24430 |||||| ||| ||||| | || || || || ||||| | || || ||| | Sbjct 17485 AGAGATGGTTCTTTTCCTCTGGGTCGGACACGTACGTGTCAATGAGCAAGGA--GTACGT 17542 Query 24431 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 24490 |||||| || ||||| || || || || || || || || || || | || || | || Sbjct 17543 TTCCGAGTGGATGTTCTCCATCGCGATCTGGAAGCCATAAAAGCAGCGCGCTTCCGGGAT 17602 Query 24491 CTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 24550 ||| || || | | || || || ||||| || || |||||||| || || Sbjct 17603 CTGGACGTCCTTCGAGAAGCGCTCGCACAAATTCTCCAGAACGATTCCGTCCGATGCGGC 17662 Query 24551 AAAAAACGCCAATACATGTTTTATAAA 24577 || || || | ||||| || || || Sbjct 17663 GAAGAAGGCGAGCACATGCTTGATGAA 17689 >seq1059 Length=17963 Score = 129 bits (142), Expect = 7e-25 Identities = 422/648 (65%), Gaps = 12/648 (2%) Strand=Plus/Plus Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||||| |||||| |||| |||||| ||||| || || || || |||| || || ||| Sbjct 16156 CCACTGTCCGTCCTCCTCCACTCGCTTCATGAACAGGTCCGGCGTCCACAGCGCGTAAAA 16215 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 ||||| | | | || || || || ||||| || ||||||||| | | Sbjct 16216 GAGATCACGCGCACGTGACTCTTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAA 16275 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 ||| || | |||||||| || | ||| || | | || || || || || Sbjct 16276 AATGTCGGCGTGCCACGGCTCAATGTAGCAGGCAAACGCACCTTTGCGCTTACCACCGCC 16335 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 |||||| | ||| | || |||| ||| || |||| || |||||| | ||| || || || Sbjct 16336 CTGATCCACGTAACGCGCTGTGTCATTGTACACTCGCAGCATTGGTACAATGCCGTTTGA 16395 Query 54250 TGCACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 54308 | ||||| || ||| || || ||||| ||||||| || || ||| || |||| Sbjct 16396 CGAGCCATTTGTGCCCCGA-ATGTAGCTCTTGGTGGCACGGATGTTCGAAATGGAGAGAC 16454 Query 54309 CTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 54368 | || || || || || || || | ||||| || || | ||||||||||||||| | Sbjct 16455 CGATGCCGCCGGCTGACTTGGAAATCACCGCGCAGCGCTTCAGCGTATCATAGATGCCTT 16514 Query 54369 CTATACTATCATCCATCATGTTAAGTAGAAAAC---AGCTAGACATTTGGTGACGACTAG 54425 | || || || ||||| | || ||||| | |||| || | || || | | Sbjct 16515 CGATCGAGTCTTCTTTCATGGTCAGCAGAAAGCACGAGCT-GAGCTGCGGGCGCGGC--G 16571 Query 54426 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 54485 | | ||||| || || || || || || ||||| || | |||| || | | | || Sbjct 16572 TGCTTGCATTGAACAAAGTCGGCGAGGCATGCGTGAAGAACTTTTGCGACAACATTTCGT 16631 Query 54486 ACGTCTCGATA--GCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 ||||||||| | ||| | | | ||| || || |||||||| || ||||| | Sbjct 16632 ACGTCTCGAGAACGCTCGGGATGTCGTGCAT--GTGGATGCCTACTGCCACGCGCATCAG 16689 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 ||||||||| |||| || || | || ||| || || | ||| || ||| | Sbjct 16690 CATGTGCTGCGGTCGCTCCACCACCTGTCCGTTCATGCGCAAAAGGTACGAACGTTCGAG 16749 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 || || || ||||| |||| ||| | || || || |||||||| || Sbjct 16750 CGTCTTGAACCCAAAGTAGTCGTAGCAGAAATCGCGGTCGTAAATGAT 16797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593699231538720