Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq963 327 1e-84 seq1200 145 8e-30 seq970 120 3e-22 seq2049 100 3e-16 >seq963 Length=27641 Score = 327 bits (362), Expect = 1e-84 Identities = 542/772 (70%), Gaps = 23/772 (3%) Strand=Plus/Minus Query 116602 CCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGA 116661 ||||| | | ||||||| || ||| ||||| ||| |||||||| ||| ||| Sbjct 17831 CCGGTACACGCTTTTCCCGATCAGGCACCACGACATCTGGAAAATGTACAAGAAGCACGA 17772 Query 116662 GGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGG-GAGC 116720 |||||| |||||||||| |||||| | |||||| | |||| | | ||| || | Sbjct 17771 GGCGTCCTTCTGGACCGCCGAGGAAATCGACCTGAGCTCGGACTTGCTGCAGTGGCGATC 17712 Query 116721 GCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCG 116780 ||| ||| | | |||| || ||||||||||| ||||| ||||| |||||||| | Sbjct 17711 GCTC-AACAAGGATGAGCAGCACTTCATCAAGCATGTGCTCGCCTTCTTCGCCGCATCGG 17653 Query 116781 ACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGG 116840 |||| ||||| |||||| || |||||| ||| | |||| || ||| | | || | Sbjct 17652 ACGGAATCGTTCTGGAGAATTTGTGCGAGCGCTTCTCGAAGGACGTCCAGATCCCGGAAG 17593 Query 116841 CGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGA 116900 |||| ||||| || ||||| |||||||| ||||||||| | |||||||||| ||| || Sbjct 17592 CGCGCTGCTTTTATGGCTTCCAGATCGCGATGGAGAACATCCACTCGGAAACGTACTCCT 17533 Query 116901 CCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCG 116960 ||||| |||||||||||| | | ||||| ||| || | | || |||| || | Sbjct 17532 TGCTCATTGACACGTACGTGTCCGACCCAGAGGAAAAGAACCATCTCTTCCACGCTATGG 17473 Query 116961 AGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGC-CGGCAGA 117019 | ||| || ||||| || | |||||||||||||| || |||||| | || Sbjct 17472 AAGAGATTCCCTGCGTGAAGAAAAAGGCCGAGTGGGCTTTGACGTGGATCTCATCGC--- 17416 Query 117020 GAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCG 117079 | || |||| | ||||| ||||| || || || || ||||| || | || || || Sbjct 17415 -ACGCATCCTTTGCAGAGCGTCTGGTCGCGTTTGCCGCAGTCGAAGGAATTTTTTTCTCC 17357 Query 117080 GGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139 ||| |||| ||| || |||||||||||||| ||||| |||||||| || || || ||| Sbjct 17356 GGCTCTTTCTGCGCAATCTTTTGGCTCAAGAAGCGCGGGCTCATGCCTGGACTCACGTTC 17297 Query 117140 AGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTC 117199 ||||| ||||| || || | |||||||||||||| ||||||||||| || | ||| | Sbjct 17296 AGCAATGAGCTGATTTCGCGAGACGAGGGTCTGCACTGCGACTTTGCGTGCCTCTTGTAC 17237 Query 117200 AAGCATTT----GGTGCAGCGACCGAGCG---CGGCGCGCGTCAGGGAGATCGTCACCGA 117252 ||||| | | | ||| |||| || ||| || ||| | ||| |||| Sbjct 17236 -AGCATGTGCCCGCAGAAGCTGCCGAACGAAACGGTGC---TCA---ACATCATCACGAG 17184 Query 117253 CGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTC-TGCTGGGAC 117311 ||| || || |||| || || | | || |||||||| ||||| | || | || Sbjct 17183 CGCTGTTGCGTGCGAGAAGGAATTTATTATTGACGCGCTGCC-GTGCGACTTGATCGGGA 17125 Query 117312 TCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCT 117363 | || ||||| ||| ||||||| || ||||| ||||||||| | ||||| Sbjct 17124 TGAACAGCGAACTTATGGCGCAATATATTGAGTTTGTCGCCGACCGCCTGCT 17073 >seq1200 Length=24482 Score = 145 bits (160), Expect = 8e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| |||||||| || ||||| |||| || || || | Sbjct 18895 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTCGAGGTGGAGTCCTCG 18836 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || |||| ||||| ||||||||||| | || || Sbjct 18835 GACACGATCGACAACG-TCAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCAGATCA 18777 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| |||||| || ||||| || |||| |||||| ||| |||||||| Sbjct 18776 GCAGCGCTTGATCTTCGCGGGGAAGCAGCTAGAGGACGGGCGCACGCTCTCGGACTACAA 18717 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 ||| ||||||||| |||| || || | ||| ||||| || | || |||||| Sbjct 18716 CATTCAGAAGGAGTCCACCCTCCACTTGGTGCTGCGCCTGCGCGGAGGCGGC 18665 >seq970 Length=23808 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || ||||||||||| || ||||| | || ||||| || Sbjct 22735 AACATGCAGATTTTCGTCAAGACCCTCACGGGCAAGACAATCACGTTGGAGGTCGAGTCC 22676 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || |||| ||||| || |||||||| | ||| Sbjct 22675 TCGGACACCATCGATAATGTCAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCAGAC 22616 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || | || | |||||||| |||||||| |||| || || || ||||| Sbjct 22615 CAGCAGCGCTTGATTTTTGCGGGCAAGCAGCTGGAGGACGGACGAACACTGTCAGACTAT 22556 Query 40867 AACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||||| | || |||| Sbjct 22555 AACATCCAGAAGGAGTCGACCTTGCA 22530 >seq2049 Length=21382 Score = 100 bits (110), Expect = 3e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 40789 GAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAG 40848 ||||||||||| |||||||||| || || || | ||| || || |||||||| |||| Sbjct 21382 GAGGGCATCCCGCCGGACCAGCAGCGCCTGATTTTCGCCGGAAAGCAGCTGGAGGACGGC 21323 Query 40849 CGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTG 40908 ||||| || ||||||||||||||||||||| | ||||| || | ||| ||||| || Sbjct 21322 CGCACGCTGTCAGACTACAACATCCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGCCTG 21263 Query 40909 AGGGGCGG 40916 | || || Sbjct 21262 CGTGGAGG 21255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515199789116640