Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1200 145 7e-30 seq970 104 2e-17 seq2751 86.0 5e-12 >seq1200 Length=24482 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | || ||||||||||| || ||||| || ||||||||||| || Sbjct 18669 CCTCCGCGCAGGCGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAG 18728 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | |||||| ||||| ||||| || || ||| |||| | ||||||||||| || || Sbjct 18729 AGCGTGCGCCCGTCCTCTAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGATCTGGCGGG 18788 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| ||| || || || | |||| ||||||| | ||| ||| Sbjct 18789 ATGCCCTCCTTGTCCTGAATCTTCGCCTTGACGTTGTCGATCGTGTCCGAGGACTCCACC 18848 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| || | ||| ||||| ||||| || || ||||| ||||||||| Sbjct 18849 TCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 18896 >seq970 Length=23808 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || |||||||| | || ||||| || || ||||| || || | Sbjct 22506 CCACCGCGCAGACGCAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTC--TG 22563 Query 118572 ATAGTGCGCGTA--TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| ||| ||||| ||||| || || || | || | |||||||| || || | Sbjct 22564 ACAGTGTTCGTCCGTCCTCCAGCTGCTTGCCCGCAAAAATCAAGCGCTGCTGGTCTGGCG 22623 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| ||||||||| ||| || || || | |||| |||||||| | ||||| Sbjct 22624 GGATGCCTTCCTTGTCTTGAATCTTCGCCTTGACATTATCGATGGTGTCCGAGGACTCGA 22683 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| | || | || ||||| || || || || || |||||||||||| Sbjct 22684 CCTCCAACGTGATTGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATG 22733 >seq2751 Length=18403 Score = 86.0 bits (94), Expect = 5e-12 Identities = 114/158 (72%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 118592 CTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAAT 118651 ||| ||||| ||| | || || |||||||| || || || |||||||||||||| ||| Sbjct 18403 CTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAAT 18344 Query 118652 TTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCC 118711 || || || | || | ||||| | ||| ||||||| || | || || || Sbjct 18343 CTTGGCCTTCACATTATCAATCGTGTCGGACGACTCCACCTCGAGCGTGATGGTCTTTCC 18284 Query 118712 GGTCAGAGTTTTTACAAAAATCTGCATG---GCTTATT 118746 |||||| || || ||||||||||||||| ||||||| Sbjct 18283 GGTCAGCGTCTTCACAAAAATCTGCATGCTTGCTTATT 18246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433814464053688