Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1200 143 3e-29 seq2751 98.7 1e-15 seq970 93.3 5e-14 >seq1200 Length=24482 Score = 143 bits (158), Expect = 3e-29 Identities = 165/217 (76%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| |||||| || | ||| |||||| ||||| ||||| || | || || ||| || Sbjct 18681 CGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGCCCG 18740 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || ||||||||||| || ||||| || | |||||||| || | ||| | || ||||||| Sbjct 18741 TCCTCTAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGATCTGGCGGGATGCCCTCCTTG 18800 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 ||| ||| | || | |||| ||| | | | |||||| || ||||| |||| ||||| Sbjct 18801 TCC-TGAATCTTCGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCCACCTCGAGCGTGA 18858 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || |||||||| |||||||| |||||||| ||||| Sbjct 18859 TCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 18895 >seq2751 Length=18403 Score = 98.7 bits (108), Expect = 1e-15 Identities = 112/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 43037 CTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGAT 43096 |||||| || ||||| || || ||||||||||| | ||| | || |||||||||| ||| Sbjct 18403 CTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC-TGAA 18345 Query 43097 TTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGC 43155 | || | || | | | | ||||||| ||| ||||| |||| ||||||||| || | Sbjct 18344 TCTTGGCCTTCACATTATCAATCGTGTCGGACGACTCCACCTCGAGCGTGATGGTCTTTC 18285 Query 43156 CCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || |||||||| ||||| || ||||| Sbjct 18284 CGGTCAGCGTCTTCACAAAAATCTGCAT 18257 >seq970 Length=23808 Score = 93.3 bits (102), Expect = 5e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| ||||| || |||||| || || || || || | ||| || || | Sbjct 22517 ACGCAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCGTCC 22576 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || || || || | ||||||||||| | ||| | || ||||| Sbjct 22577 GTCCTCCAGCTGCTTGCCCGCAAAAATCAAGCGCTGCTGGTCTGGCGGGATGCCTTCCTT 22636 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 || | ||| | || | |||| | | | ||||| || || || || | ||||| Sbjct 22637 GT-CTTGAATCTTCGCCTTGACATTATCGATGGTGTCCGAGGACTCGACCTCCAACGTGA 22695 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 | || |||||||| || ||||| || || || ||||| || Sbjct 22696 TTGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATGTT 22735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571796056771920