Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1200 116 2e-21 seq970 116 2e-21 seq2751 98.7 6e-16 seq2049 96.9 2e-15 >seq1200 Length=24482 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | |||||||| ||| | || || ||||| ||||||||||| || Sbjct 18669 CCTCCGCGCAGGCGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAG 18728 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| || |||| || | |||||| || ||||| || | |||||||| || | |||| Sbjct 18729 AGCGTGCGCCCGTCCTCTAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGATCTGGCGGG 18788 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | | | | |||| || | || || || Sbjct 18789 -ATGCCCTCCTTGTCCTGAATCTTCGCCTTGACGTTGTCGATCGTGTCCGAGGACTCCAC 18847 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||| || ||||| || || || ||||||||||||||||| Sbjct 18848 CTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 18895 >seq970 Length=23808 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||| |||| ||| || || || ||||| ||||| ||||| ||| Sbjct 22506 CCACCGCGCAGACGCAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCTGAC 22565 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || || |||| |||| ||||||||| || ||||| | ||||||||||| | |||| Sbjct 22566 AGTGTTCGTCCGTCCTCCAGCTGCTTGCCCGCAAAAATCAAGCGCTGCTGGTCTGGCGGG 22625 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| ||||| ||| | || | || | || | || ||||| Sbjct 22626 -ATGCCTTCCTTGTCTTGAATCTTCGCCTTGACATTATCGATGGTGTCCGAGGACTCGAC 22684 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||| || ||||| ||||| || || || || |||||||| Sbjct 22685 CTCCAACGTGATTGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCAT 22732 >seq2751 Length=18403 Score = 98.7 bits (108), Expect = 6e-16 Identities = 112/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 34243 CTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGGCACGCTCTCCTTGTCGGCTA 34301 |||||| || |||||||| || |||||||||| || |||| | || ||||||||| | Sbjct 18403 CTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCCGGCGGG-ATGCCCTCCTTGTCCTGAA 18345 Query 34302 TCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGC 34361 |||| ||| | || | |||| |||| ||| || || || | ||||||||| || | Sbjct 18344 TCTTGGCCTTCACATTATCAATCGTGTCGGACGACTCCACCTCGAGCGTGATGGTCTTTC 18285 Query 34362 CGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || || |||||||| |||||||| Sbjct 18284 CGGTCAGCGTCTTCACAAAAATCTGCAT 18257 >seq2049 Length=21382 Score = 96.9 bits (106), Expect = 2e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219 ||||| || ||||| | |||||||| ||| | || || ||||| ||||||||||| Sbjct 21252 AATCCTCCACGCAGGCGCAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCT 21311 Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 |||||| ||| |||| |||| |||||| || |||||||| || ||||||||||| Sbjct 21312 GACAGCGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTC 21367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323060132555840