Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1059 165 2e-35 seq963 84.2 5e-11 >seq1059 Length=17963 Score = 165 bits (182), Expect = 2e-35 Identities = 430/643 (67%), Gaps = 36/643 (6%) Strand=Plus/Minus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||||| | ||||| ||||| ||||| || ||||| || | || | || || Sbjct 16773 TACGACTACTTTGGGTTCAAGACGCTCGAACGTTCGTACCTTTTGCGCATGAACGGACAG 16714 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 | ||||| ||| ||||||||| ||||||| ||||| || || || |||| | | ||| Sbjct 16713 GTGGTGGAGCGACCGCAGCACATGCTGATGCGCGTGGCAGTAGGCATCCACATGCACGAC 16654 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGA-GTG--AACGCTGGATGACACATGCC 248994 || |||||| |||||||||||| | |||| || || | | || |||||| Sbjct 16653 ATCCCGAGCGTTCTCGAGACGTAC---GAAATGTTGTCGCAAAAGTTCTTCACGCATGCC 16597 Query 248995 ACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTT 249054 | ||||| | ||||| || | || | ||||| |||||||||||||| || Sbjct 16596 TCGCCGACTTTGTTCAATGCAAGCACGCCGCGCCCGCAGCTCAGCTCGTGCTTTCTGCTG 16537 Query 249055 GCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATT 249114 ||||| |||| ||||| |||| ||||| ||||| ||||| || | ||| |||| Sbjct 16536 ACCATGAAAGAAGACTCGATCGAAGGCATCTATGATACGCTGAAGCGCTGCGCGGTGATT 16477 Query 249115 TCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAG---CGAAGGGTTCG 249171 || || | || ||||| |||||||||||| | || |||||||| | | ||| | Sbjct 16476 TCCAAGTCAGCCGGCGGCATCGGTCTCTCCATTTCGAACATCCGTGCCACCAAGAG---C 16420 Query 249172 TACATCAAAGGTACAAATGG--GGTCAGTGATGGTATCGTACCCCTCCTTCGA---TGCT 249226 ||||| || |||||||| |||| | || || ||||| | || ||| | | Sbjct 16419 TACATTCGGGGCACAAATGGCTCGTCA--AACGGCATTGTACCAATGCTGCGAGTGTACA 16362 Query 249227 TTGAGTCCACCGCCAGGTTCATCAACCAGGCCGG------GCGCCGAAAGGGGTCGTTCG 249280 ||| ||| || | | | | | |||| ||| |||| ||||| | |||| | Sbjct 16361 ATGA---CACAGCGCGTTACGTGGATCAGGGCGGTGGTAAGCGC--AAAGGTG-CGTTTG 16308 Query 249281 CCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACA 249340 || || | || |||||||||||| || || |||||||| ||| || |||||| Sbjct 16307 CCTGCTACATTGAGCCGTGGCACGCCGACATTTTTGAGTTCCTCGACCTGCGCAAGAACC 16248 Query 249341 ACGGCAACGA--GCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTT 249398 ||||||| || ||| | |||||||| ||||| |||| |||||| | ||| | Sbjct 16247 ACGGCAAGGAAGAGTCA--CGTGCGCGTGATCTCTTTTACGCGCTGTGGACGCCGGACCT 16190 Query 249399 GTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTT 249441 ||||||| || || ||| ||||| | |||| || |||| Sbjct 16189 GTTCATGAAGCGAGTGGAGGAGGACGGACAGTGGA-GCCTCTT 16148 >seq963 Length=27641 Score = 84.2 bits (92), Expect = 5e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || |||| ||| |||||| |||| | |||||||||||||||||||| || | ||| Sbjct 16947 ACACCGGCCTTTTGGTACTCTCCCACACGCTTCTCAAAAAAGTTGGTCTTCCCTTCGAGC 17006 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAG 157362 ||||||| |||||||| || || |||||| | || ||| || || |||| ||| || Sbjct 17007 GAAATCAGCTCCATCCAGTCAAACGGGTTGCGGGCGTGGTAAACTTTTTCGTGCCCGAG 17065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073724934497152