Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1200 132 4e-26 seq970 109 4e-19 seq2049 86.0 5e-12 >seq1200 Length=24482 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||||||||||||||| || ||| |||| || Sbjct 18687 ACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGCCCGTCCTCT 18746 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| ||||| ||||| || || || || | |||||||||||| | Sbjct 18747 AGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGATCTGGCGGGATGCCCTCCTTGTCCTGA 18806 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | ||||| ||||||||| | || ||||||||| Sbjct 18807 ATCTTCGCCTTGACGTTGTCGATCGTGTCCGAGGACTCCACCTCGAGCGTGATCGTCTTG 18866 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||||||| |||||||||||||| |||||| || Sbjct 18867 CCCGTCAGCGTCTTCACAAAGATCTGCATGATG 18899 >seq970 Length=23808 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| || ||||||||| ||||| ||||| |||| || |||| ||| Sbjct 22524 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCGTCCGTCCTCC 22583 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || ||||| ||||| ||||| || || | || |||||||| | Sbjct 22584 AGCTGCTTGCCCGCAAAAATCAAGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGA 22643 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| ||| ||||||| || || |||||| Sbjct 22644 ATCTTCGCCTTGACATTATCGATGGTGTCCGAGGACTCGACCTCCAACGTGATTGTCTTG 22703 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCC 45342 ||||| || ||||| || || || ||||||||||| Sbjct 22704 CCCGTGAGGGTCTTGACGAAAATCTGCATGTTGCC 22738 >seq2049 Length=21382 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| ||||| ||||||||| ||||||||||| ||| ||| |||| ||| Sbjct 21273 ACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCTGACAGCGTGCGGCCGTCCTCC 21332 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTC 45237 || || ||||||||||| |||| ||||| ||||| || || | ||||| Sbjct 21333 AGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTC 21382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395060687653294