Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1059 241 1e-58 seq963 215 5e-51 seq970 98.7 9e-16 seq2751 86.0 6e-12 >seq1059 Length=17963 Score = 241 bits (266), Expect = 1e-58 Identities = 632/958 (66%), Gaps = 6/958 (1%) Strand=Plus/Plus Query 23006 ACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTG 23065 |||||| | || | || || || || | ||||| |||||||||||||| | ||| Sbjct 15836 ACAAACATATTCAGCGCAATGGACGCCAAGTTGCACACGGCCACCTCGTCAGGTGCTGTG 15895 Query 23066 TACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTG 23125 ||||| | ||||| || || | |||||| | || ||||| | || |||||| Sbjct 15896 TACTCAATGATTTCTGTGCACAAATTGCTGCTGCGGATTGTGCCGAGGTTCTGCTGGTTC 15955 Query 23126 CTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGAC 23185 ||| ||| | ||||||||| ||||||||||| ||||| ||||| | |||||| Sbjct 15956 GACTTTGAGTTGGCGGCATCCTTGTACAGCATGTACGGTGTGCCGGTCTCAATCTGCGAG 16015 Query 23186 TCGATGATCGCTCGCCACATAGTCTGAGCGT-GAACACGTCGCACGTAC-CTGCCTTCTT 23243 || | | ||| ||||| || || ||| | | |||| | || | | |||||| | Sbjct 16016 TCAAGCACCGCAAACCACA--GTTTGCGCGCCGGAATCGTCTCGCGCGCGCGGCCTTCGT 16073 Query 23244 CCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCG 23303 |||||||| ||||| ||| || || || | ||| | |||| ||| || |||| Sbjct 16074 TTTCGTACTTGGTGTACAGCGCCTCGAAGTCCGGACCCCACGTGTCGCACAGTCCCGGCG 16133 Query 23304 ATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGAT 23363 || | || || | ||| |||||| | ||| | || || || |||| || || | Sbjct 16134 CTTCGTTGGGGCAGAAGAGGCTCCACTGTCCGTCCTCCTCCACTCGCTTCATGAACAGGT 16193 Query 23364 CCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCT 23423 |||| |||| || ||||| || || || || || || ||| || |||||| ||||| Sbjct 16194 CCGGCGTCCACAGCGCGTAAAAGAGATCACGCGCACGTGACTCTTCCTTGCCGTGGTTCT 16253 Query 23424 TTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACG 23483 | || || | || || || | ||| || ||||||||||| | ||| |||||||| Sbjct 16254 TGCGCAGGTCGAGGAACTCAAAAATGTCGGCGTGCCACGGCTCAATGTAGCAGGCAAACG 16313 Query 23484 CGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTA 23543 | || | |||| ||||||||||| |||||||| || |||| |||||||||| | Sbjct 16314 CACCTTTGCGCTTACCACCGCCCTGATCCACGTAACGCGCTGTGTCATTGTACACTCGCA 16373 Query 23544 GCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCT-TTTGCT 23602 |||| || || | ||||| |||| ||| | |||| | | | | | | | || Sbjct 16374 GCATTGGTACAATGCCGTTTGACGAGCCATTTGTGCCC-CGAATGTAGCTCTTGGTGGCA 16432 Query 23603 CGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGT 23662 || | ||| || | || ||| ||||| ||| | || || || |||| |||||| | Sbjct 16433 CGGATGTTCGAAATGGAGAGACCGATGCCGCCGGCTGACTTGGAAATCACCGCGCAGCGC 16492 Query 23663 TTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAA 23722 ||||| || || |||||||| ||||| ||| ||||| | | | || || ||||| Sbjct 16493 TTCAGCGTATCATAGATGCCTTCGATCGAGTCTTCTTTCATGGTCAGCAGAAAGCACGAG 16552 Query 23723 GACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTAT 23782 | |||| ||||| || ||||| ||||| ||| ||||| ||| | Sbjct 16553 CTGAGCTGCGGGCGCGGCGTGCTTGCATTGAACAAAGTCGGCGAGGCATGCGTGAAGAAC 16612 Query 23783 CCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCG 23842 | ||||| | | |||||| |||| || ||||| | ||| || || Sbjct 16613 TTTTGCGACAACATTTCGTACGTCTCGAGAACGCTCGGGATGTCGTGCATGTGGATGCCT 16672 Query 23843 ATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAAC 23902 | || |||||||||| ||||| || |||| ||| ||| ||||| || || Sbjct 16673 ACTGCCACGCGCATCAGCATGTGCTGCGGTCGCTCCACCACCTGTCCGTTCATGCGCAAA 16732 Query 23903 AGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGT 23960 || || ||||||| | ||| || || ||||| ||||| ||| || || || |||| Sbjct 16733 AGGTACGAACGTTCGAGCGTCTTGAACCCAAAGTAGTCGTAGCAGAAATCGCGGTCGT 16790 Score = 159 bits (176), Expect = 3e-34 Identities = 373/557 (67%), Gaps = 12/557 (2%) Strand=Plus/Plus Query 22115 GTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTCAGA 22174 || ||||| || || || || || || |||||| | |||||||| || ||||| || Sbjct 14912 GTGAACTGAATCGCATTGGCAGCGGGACGGGTGCGCAAGTAATACATACCGGTCTTGAGG 14971 Query 22175 CCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTCCATG 22234 |||| ||||| ||||||| || || || | || || || | || |||| Sbjct 14972 CCCAGTTTCCATCCGTAAAAGTGCATGGAGGACAGCTTGCCTGCGTTGGGGGCAGCCATA 15031 Query 22235 TACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATC 22294 | |||||| || | || || ||||| ||||| || || ||||| ||||| || | | Sbjct 15032 TGCACATTCAAGCTCATGCTTTGGTCGATGAACGCGCCACGGTCGGCCGCCATCTTCAAC 15091 Query 22295 AATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATC 22354 ||||| | ||| |||||||| ||||| ||||| |||| | | ||| ||| ||| Sbjct 15092 AATGTCTTCTGCGAAATTTCCCAAACGGTTTTGTAAAGTTCACGCAGCTCAGCCGGAATC 15151 Query 22355 GATTCG--ATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGT 22412 | || | || || || || || || || |||||| || || ||| || || Sbjct 15152 --TCCGTCAGGCTTTGTACTGAACCATTGTTTGCGATGATCTTGTTCTTCGTCGCATTGT 15209 Query 22413 TCCACAAACCGATGGCGGT-CAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCG 22471 |||| | || | | | | || ||| | | || ||| ||| || || |||||| Sbjct 15210 TCCAAAGGCCAA-GACTCTGCAGATCACTCAGCAAATGCTTGTTAACAACGGCGAACTCG 15268 Query 22472 CCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTT 22531 || | | |||||||| ||| ||||| || ||| ||||||| || | || ||||| Sbjct 15269 CCCGCGAGAACGCGGCGCGTGTAGATGTTTGACGTGTACGGTTCAAAGCACTCGTTGTTA 15328 Query 22532 CCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAG 22591 ||||| ||||| | || ||||| |||||||| ||||| | || |||||||| | |||| Sbjct 15329 CCCAGAATCTGCGACGTGGAAGCAGTCGGCATGGGCGCTACCAAGAGCGAGTTGCGCAAG 15388 Query 22592 CCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGA---CGGCGTC 22648 ||||||| ||||| ||||||| | ||| || | | |||| ||||||| Sbjct 15389 CCGTGCTCAAGGATTTTTTGCTTGAGCGCTGCCCAATCGTATCGCCCGGACGCCGGCGTC 15448 Query 22649 ACATTGTCCCACATATC 22665 || | |||||| ||| Sbjct 15449 AC---GCCCCACAAATC 15462 >seq963 Length=27641 Score = 215 bits (238), Expect = 5e-51 Identities = 613/923 (66%), Gaps = 28/923 (3%) Strand=Plus/Minus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 ||||| ||||| |||||||| ||| || || || || ||||||| ||| ||| | ||| Sbjct 17800 GACATCTGGAAAATGTACAAGAAGCACGAGGCGTCCTTCTGGACCGCCGAGGAAATCGAC 17741 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 ||| ||| || | ||| || ||||| | |||| | || || || Sbjct 17740 CTGAGCTCGGACTTGCTGCAGTGGCGATCGCTCAACAAGGATGAGCAGCACTTCATCAAG 17681 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || ||| | || || ||||||||||| || || || ||| ||||||||| ||| | Sbjct 17680 CATGTGCTCGCCTTCTTCGCCGCATCGGACGGAATCGTTCTGGAGAATTTGTGCGAGCGC 17621 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || | || || || | |||| ||| | |||||||| || || || | || || Sbjct 17620 TTCTCGAAGGACGTCCAGATCCCGGAAGCGCGCTGCTTTTATGGCTTCCAGATCGCGATG 17561 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 || ||| | || || |||| ||| || | ||||| || ||||||||| ||| || Sbjct 17560 GAGAACATCCACTCGGAAACGTACTCCTTGCTCATTGACACGTACGTGTCCGACCCAGAG 17501 Query 57867 GA---GAAACGTAGACTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAAGGC 57922 || ||| | | || ||| |||| || ||| || ||| ||| | || ||||| Sbjct 17500 GAAAAGAACCAT---CTCTTCCACGCTATGGAAGAGATTCCCTGCG-TGAAGAAAAAGGC 17445 Query 57923 AGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGC 57982 |||||| | | | ||||| | ||| ||| | | || || ||| | || |||| Sbjct 17444 CGAGTGGGCTTTGACGTGGATCTCAT-CGC-ACG-CATCCTTTGCAGAGCGTCTGGTCGC 17388 Query 57983 GTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGA 58041 ||| ||||| |||||||| || || || || ||| || |||| |||| |||||| | | Sbjct 17387 GTTTGCCGCAGTCGAAGGAATTTTTTTCTCCGGCTCTTTCTGCG-CAATCTTTTGGCTCA 17329 Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 |||| ||||| || ||||| || || ||||| ||||| ||| |||| ||||| ||||||| Sbjct 17328 AGAAGCGCGGGCTCATGCCTGGACTCACGTTCAGCAATGAGCTGATTTCGCGAGACGAGG 17269 Query 58102 GTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACAT-TGTC--AATAAACCGACGC 58158 |||| || || ||||||||||| ||||| ||| || | | || | | || Sbjct 17268 GTCTGCACTGCGACTTTGCGTGCCTCTTGTAC---AGCATGTGCCCGCAGAAGCTGCCGA 17212 Query 58159 GGGATCGCATCTTGGACATTATCACCGAG-GCGGTCGCGATCGAAAATGAGTTTGTCACC 58217 || | | |||| |||| |||| || || ||| ||| || || ||| | | Sbjct 17211 ACGAAACGGTGCTCAACATCATCA-CGAGCGCTGTTGCGTGCGAGAAGGAATTTATTATT 17153 Query 58218 GAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAG 58277 || || || ||| | | || |||| ||||||| || | ||| | | || |||||| Sbjct 17152 GACGCGCTGCCGTGCGACTTGATCGGGATGAACAGCGAACTTATGGCGCAATATATTGAG 17093 Query 58278 TTTGTTGCCGACAGACTTTTGC--TCGAACTGATTGGAGAGCGTCATTACAACACGAAAA 58335 ||||| |||||| | || | | || | | || | || |||| || | | Sbjct 17092 TTTGTCGCCGACCGCCTGCTCCAGTCCCTCGGGCACGAAAAAGT--TTACCACGCCCGCA 17035 Query 58336 ATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaa 58395 | |||||||| | ||| | ||||| |||||||| || ||||| |||||||| || || Sbjct 17034 ACCCGTTTGACTGGATGGAGCTGATTTCGCTCGAAGGGAAGACCAACTTTTTTGAGAAGC 16975 Query 58396 aaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGTAACAAGTTGGAGGACGATATTT 58455 || | || || ||||| ||| |||||| || ||||| ||| | | | | Sbjct 16974 GTGTGGGAGAGTACCAAAAGGCCGGTGTGATGGACG---ACAAGAAGGACTCCAAGGTGT 16918 Query 58456 TCACTTTGGATGCTGCCTTTTAA 58478 ||||| |||| |||| |||||| Sbjct 16917 TCACTCTGGACGCTGATTTTTAA 16895 >seq970 Length=23808 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| |||||||| ||||| || || ||||| || ||||| | || || || | Sbjct 22735 AACATGCAGATTTTCGTCAAGACCCTCACGGGCAAGACAATCACGTTGGAGGTCGAGTCC 22676 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| || || |||||||||||| | ||||| ||| Sbjct 22675 TCGGACACCATCGATAATGTCAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCAGAC 22616 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATT 31367 |||||||| | || || || ||||| ||| |||| ||| | | ||| | | || | Sbjct 22615 CAGCAGCGCTTGATTTTTGCGGGCAAGCAGCTGGAGGACGGACGAACACTGTCA--GACT 22558 Query 31368 ATAACATTCAAAAAGAATCGAC 31389 ||||||| || || || ||||| Sbjct 22557 ATAACATCCAGAAGGAGTCGAC 22536 >seq2751 Length=18403 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31185 AATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244 || ||| |||||| ||||| || ||||| ||||| || || || ||||| |||| || | Sbjct 18249 AAGCAAGCATGCAGATTTTTGTGAAGACGCTGACCGGAAAGACCATCACGCTCGAGGTGG 18308 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 | ||||||||| | || | || || | || ||||||||| ||| | |||| Sbjct 18309 AGTCGTCCGACACGATTGATAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGC 18368 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAG 31339 | ||||||||||| || || ||||| || || ||| Sbjct 18369 CGGACCAGCAGCGCCTGATTTTCGCCGGAAAGCAG 18403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445749605750880