Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq963 141 1e-28 seq1059 132 6e-26 >seq963 Length=27641 Score = 141 bits (156), Expect = 1e-28 Identities = 255/368 (69%), Gaps = 6/368 (2%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || |||||||||||||||||||||| ||| | || || ||||||||| Sbjct 17247 CACGCAAAGTCGCAGTGCAGACCCTCGTCTCGCGAAATCAGCTCATTGCTGAACGTGAGT 17306 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || ||||| || |||||||| || | ||| || ||||| || || Sbjct 17307 CCAGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATTGCGCAGAAAGAGCCGGAGAAAAAA 17366 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG-TAT 33760 |||||||| ||||| ||||| || | || | |||| || | ||| || ||| || Sbjct 17367 ATTCCTTCGACTGCGGCAAACGCGACCAGACGCTCTGCAAAGGATGCG-TGCGATGAGAT 17425 Query 33761 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 |||| | |||||| |||||||| || || || || || ||| ||| || || | || Sbjct 17426 CCACGTCAAAGCCCACTCGGCCTTTTTCTTCACGCAGGGAATCTCTTCCATAGCGTGGAA 17485 Query 33821 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATT 33878 ||||| ||| ||||| | || || || || || || | || || ||| || Sbjct 17486 GAGATGGTTCTTTTCCTCTGGGTCGGACACGTACGTGTCAATGAGCAAGGA--GTACGTT 17543 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 ||||| || ||||| || || || ||||| || || || || || | || || | ||| Sbjct 17544 TCCGAGTGGATGTTCTCCATCGCGATCTGGAAGCCATAAAAGCAGCGCGCTTCCGGGATC 17603 Query 33939 TGCACTTC 33946 || || || Sbjct 17604 TGGACGTC 17611 >seq1059 Length=17963 Score = 132 bits (146), Expect = 6e-26 Identities = 427/658 (65%), Gaps = 6/658 (1%) Strand=Plus/Plus Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307 ||||| |||||| |||| |||||| ||||| || || || || |||| || || ||| Sbjct 16156 CCACTGTCCGTCCTCCTCCACTCGCTTCATGAACAGGTCCGGCGTCCACAGCGCGTAAAA 16215 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 ||||| | | | || || || || ||||| || ||||||||| | | Sbjct 16216 GAGATCACGCGCACGTGACTCTTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAA 16275 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 ||| || | |||||||| || | ||| ||| | | || || || || || Sbjct 16276 AATGTCGGCGTGCCACGGCTCAATGTAGCAGGCAAACGCACCTTTGCGCTTACCACCGCC 16335 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 |||||| | ||| | || |||| ||| || |||| || |||||| | ||| |||||||| Sbjct 16336 CTGATCCACGTAACGCGCTGTGTCATTGTACACTCGCAGCATTGGTACAATGCCGTTTGA 16395 Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACC 63547 ||||| || || || |||| ||||||| || || ||| || ||||| Sbjct 16396 CGAGCCATTTGTGCCCCGAATGTAGCTCTTGGTGGCACGGATGTTCGAAATGGAGAGACC 16455 Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTC 63607 || || || || || || || | ||||| || || | ||| |||||||||||||| Sbjct 16456 GATGCCGCCGGCTGACTTGGAAATCACCGCGCAGCGCTTCAGCGTATCATAGATGCCTTC 16515 Query 63608 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAG-ACATTTGGTGACGAGTAGTTC 63666 || || || ||||| | || ||||| || | || | || | || | || | Sbjct 16516 GATCGAGTCTTCTTTCATGGTCAGCAGAAAGCA-CGAGCTGAGCTGCGGGCGCGGCGTGC 16574 Query 63667 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63726 ||||| || || || || || || ||||| || | |||| || | | | ||||| Sbjct 16575 TTGCATTGAACAAAGTCGGCGAGGCATGCGTGAAGAACTTTTGCGACAACATTTCGTACG 16634 Query 63727 TCTCAATA--GCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63784 |||| | | ||| | | | ||| || || |||||||| || ||||| | ||| Sbjct 16635 TCTCGAGAACGCTCGGGATGTCGTGCAT--GTGGATGCCTACTGCCACGCGCATCAGCAT 16692 Query 63785 GTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63844 |||||| |||| || || | | ||| || ||| | ||| || ||| | || Sbjct 16693 GTGCTGCGGTCGCTCCACCACCTGTCCGTTCATGCGCAAAAGGTACGAACGTTCGAGCGT 16752 Query 63845 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGC 63902 || || ||||| |||| ||| | || || || |||||||| || ||| || |||| Sbjct 16753 CTTGAACCCAAAGTAGTCGTAGCAGAAATCGCGGTCGTAAATGATCGCCGCATCGAGC 16810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629793871621920